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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:231.4 nTPM
GTEx:231.4 nTPM
FANTOM5:155.0 Scaled Tags Per Million
Pig:101.9 nTPM
Mouse:72.8 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

231.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 231.4
Samples: 105

Max nTPM: 537.3
Min nTPM: 62.3
Std nTPM: 97.2
Median nTPM:
315_1 62 years, female 537.3
286_1 68 years, female 512.9
229_1 69 years, female 452.7
466_1 57 years, female 451.6
335_1 73 years, female 433.6
499_1 55 years, female 398.4
414_1 84 years, female 392.1
415_1 77 years, female 359.0
313_1 79 years, female 353.5
376_1 75 years, female 352.8
217_1 76 years, male 337.6
177_1 74 years, male 335.1
318_1 68 years, male 334.2
405_1 91 years, male 325.4
265_1 87 years, male 324.2
246_1 77 years, male 320.6
356_1 87 years, female 319.9
142_1 61 years, female 317.1
468_1 89 years, male 316.0
153_1 70 years, female 313.6
149_1 88 years, male 311.2
288_1 66 years, female 307.4
264_1 73 years, female 304.7
266_1 85 years, male 304.2
320_1 89 years, female 296.6
501_1 88 years, male 295.8
35_1 74 years, female 292.7
526_1 61 years, male 289.1
115_1 83 years, male 289.0
350_1 84 years, female 288.8
126_1 63 years, male 282.6
172_1 72 years, female 282.2
377_1 82 years, female 281.3
43_1 64 years, female 279.6
354_1 81 years, female 276.0
353_1 82 years, female 274.8
81_1 67 years, male 272.1
163_1 78 years, male 271.2
319_1 81 years, male 270.6
292_1 71 years, male 264.7
518_1 75 years, female 259.0
503_1 68 years, male 255.4
311_1 78 years, male 255.1
162_1 79 years, female 254.2
324_1 76 years, male 253.7
237_1 82 years, male 250.0
109_1 81 years, female 248.5
389_1 86 years, female 237.0
413_1 59 years, female 235.6
32_1 67 years, male 234.6
9_1 66 years, female 230.5
355_1 70 years, female 230.1
251_1 78 years, male 226.7
396_1 62 years, male 223.5
379_1 60 years, male 222.1
18_1 88 years, male 221.6
348_1 84 years, male 219.0
506_1 65 years, male 206.6
99_1 64 years, male 206.3
295_1 61 years, female 204.7
480_1 63 years, male 198.6
349_1 83 years, male 197.4
254_1 77 years, female 196.4
406_1 79 years, male 195.7
308_1 70 years, female 192.4
243_1 75 years, male 190.5
314_1 67 years, male 185.9
137_1 83 years, male 176.9
394_1 75 years, female 174.4
120_1 70 years, female 174.0
375_1 74 years, female 173.6
322_1 76 years, male 173.1
425_1 59 years, female 172.2
189_1 76 years, male 171.3
404_1 82 years, female 170.5
517_1 88 years, male 167.7
117_1 61 years, male 165.8
386_1 76 years, male 165.0
447_1 81 years, male 161.5
17_1 71 years, male 157.8
6_1 73 years, female 151.5
293_1 68 years, female 146.8
4_1 88 years, female 146.6
351_1 91 years, male 143.4
317_1 60 years, male 142.5
316_1 62 years, male 142.3
119_1 70 years, female 140.3
139_1 64 years, female 134.9
145_1 84 years, male 134.6
291_1 76 years, male 131.1
495_1 57 years, female 117.6
384_1 83 years, male 116.7
452_1 88 years, female 116.4
352_1 62 years, male 115.8
321_1 62 years, female 106.5
42_1 85 years, male 103.8
89_1 63 years, male 103.8
173_1 67 years, male 100.9
218_1 71 years, female 85.3
307_1 66 years, female 83.0
347_1 72 years, male 80.4
2_1 77 years, female 79.3
491_1 89 years, female 77.8
490_1 67 years, female 74.8
41_1 94 years, female 62.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

155.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 155.0
FF:10030-101E3 24-65 years, mixed 155.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.9
Pig sample Sample description nTPM
Retina
nTPM: 101.9
Samples: 4

Max nTPM: 127.8
Min nTPM: 85.9
Sample A Female 97.5
Sample B Female 96.5
Sample C Male 127.8
Sample D Male 85.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.8
Mouse sample Sample description nTPM
Retina
nTPM: 72.8
Samples: 4

Max nTPM: 87.9
Min nTPM: 59.7
Sample A Male 64.1
Sample B Male 87.9
Sample C Female 59.7
Sample D Female 79.5

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