We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CXCL13
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CXCL13
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CXCL13
Synonyms ANGIE, ANGIE2, BCA-1, BLC, BLR1L, SCYB13
Gene descriptioni

Full gene name according to HGNC.

C-X-C motif chemokine ligand 13
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Secreted
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 4
Cytoband q21.1
Chromosome location (bp) 77511753 - 77611834
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000156234 (version 109)
Entrez gene 10563
HGNC HGNC:10639
UniProt O43927 (UniProt - Evidence at protein level)
neXtProt NX_O43927
GeneCards CXCL13
Antibodypedia CXCL13 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Chemotactic for B-lymphocytes but not for T-lymphocytes, monocytes and neutrophils. Does not induce calcium release in B-lymphocytes. Binds to BLR1/CXCR5.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Cytokine
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Chemotaxis, Inflammatory response
Gene summary (Entrez)i

Useful information about the gene from Entrez

B lymphocyte chemoattractant, independently cloned and named Angie, is an antimicrobial peptide and CXC chemokine strongly expressed in the follicles of the spleen, lymph nodes, and Peyer's patches. It preferentially promotes the migration of B lymphocytes (compared to T cells and macrophages), apparently by stimulating calcium influx into, and chemotaxis of, cells expressing Burkitt's lymphoma receptor 1 (BLR-1). It may therefore function in the homing of B lymphocytes to follicles. [provided by RefSeq, Oct 2014]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CXCL13-201
ENSP00000286758
ENST00000286758
O43927
[Direct mapping] C-X-C motif chemokine 13
Show all
Q53X90
[Target identity:100%; Query identity:100%] C-X-C motif chemokine
Show all
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0002467 [germinal center formation]
GO:0002518 [lymphocyte chemotaxis across high endothelial venule]
GO:0002544 [chronic inflammatory response]
GO:0002920 [regulation of humoral immune response]
GO:0005125 [cytokine activity]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0006935 [chemotaxis]
GO:0006952 [defense response]
GO:0006954 [inflammatory response]
GO:0006955 [immune response]
GO:0007165 [signal transduction]
GO:0007166 [cell surface receptor signaling pathway]
GO:0007204 [positive regulation of cytosolic calcium ion concentration]
GO:0007267 [cell-cell signaling]
GO:0008009 [chemokine activity]
GO:0008201 [heparin binding]
GO:0009605 [response to external stimulus]
GO:0010820 [positive regulation of T cell chemotaxis]
GO:0017134 [fibroblast growth factor binding]
GO:0030593 [neutrophil chemotaxis]
GO:0031724 [CXCR5 chemokine receptor binding]
GO:0031735 [CCR10 chemokine receptor binding]
GO:0033625 [positive regulation of integrin activation]
GO:0033634 [positive regulation of cell-cell adhesion mediated by integrin]
GO:0035754 [B cell chemotaxis]
GO:0035768 [endothelial cell chemotaxis to fibroblast growth factor]
GO:0042742 [defense response to bacterium]
GO:0045236 [CXCR chemokine receptor binding]
GO:0045765 [regulation of angiogenesis]
GO:0048018 [receptor ligand activity]
GO:0048248 [CXCR3 chemokine receptor binding]
GO:0060326 [cell chemotaxis]
GO:0061844 [antimicrobial humoral immune response mediated by antimicrobial peptide]
GO:0070098 [chemokine-mediated signaling pathway]
GO:0071222 [cellular response to lipopolysaccharide]
GO:0090630 [activation of GTPase activity]
GO:2000545 [negative regulation of endothelial cell chemotaxis to fibroblast growth factor]
Show all
109 aa
12.7 kDa
Yes 0
CXCL13-203
ENSP00000507688
ENST00000682537
O43927
[Direct mapping] C-X-C motif chemokine 13
Show all
Q53X90
[Target identity:100%; Query identity:100%] C-X-C motif chemokine
Show all
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0002467 [germinal center formation]
GO:0002518 [lymphocyte chemotaxis across high endothelial venule]
GO:0002544 [chronic inflammatory response]
GO:0002920 [regulation of humoral immune response]
GO:0005125 [cytokine activity]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0006935 [chemotaxis]
GO:0006952 [defense response]
GO:0006954 [inflammatory response]
GO:0006955 [immune response]
GO:0007165 [signal transduction]
GO:0007166 [cell surface receptor signaling pathway]
GO:0007204 [positive regulation of cytosolic calcium ion concentration]
GO:0007267 [cell-cell signaling]
GO:0008009 [chemokine activity]
GO:0008201 [heparin binding]
GO:0009605 [response to external stimulus]
GO:0010820 [positive regulation of T cell chemotaxis]
GO:0017134 [fibroblast growth factor binding]
GO:0030593 [neutrophil chemotaxis]
GO:0031724 [CXCR5 chemokine receptor binding]
GO:0031735 [CCR10 chemokine receptor binding]
GO:0033625 [positive regulation of integrin activation]
GO:0033634 [positive regulation of cell-cell adhesion mediated by integrin]
GO:0035754 [B cell chemotaxis]
GO:0035768 [endothelial cell chemotaxis to fibroblast growth factor]
GO:0042742 [defense response to bacterium]
GO:0045236 [CXCR chemokine receptor binding]
GO:0045765 [regulation of angiogenesis]
GO:0048018 [receptor ligand activity]
GO:0048248 [CXCR3 chemokine receptor binding]
GO:0060326 [cell chemotaxis]
GO:0061844 [antimicrobial humoral immune response mediated by antimicrobial peptide]
GO:0070098 [chemokine-mediated signaling pathway]
GO:0071222 [cellular response to lipopolysaccharide]
GO:0090630 [activation of GTPase activity]
GO:2000545 [negative regulation of endothelial cell chemotaxis to fibroblast growth factor]
Show all
109 aa
12.7 kDa
Yes 0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org