We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NPTN
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • NPTN
BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:131.3 nTPM
GTEx:131.3 nTPM
FANTOM5:126.0 Scaled Tags Per Million
Pig:123.7 nTPM
Mouse:320.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 131.3
Samples: 105

Max nTPM: 196.9
Min nTPM: 81.6
Std nTPM: 20.5
Median nTPM:
237_1 82 years, male 196.9
375_1 74 years, female 187.5
177_1 74 years, male 178.6
386_1 76 years, male 172.8
413_1 59 years, female 171.3
172_1 72 years, female 163.4
404_1 82 years, female 162.0
352_1 62 years, male 161.0
321_1 62 years, female 159.8
355_1 70 years, female 159.8
229_1 69 years, female 159.1
425_1 59 years, female 156.4
163_1 78 years, male 156.3
347_1 72 years, male 155.8
243_1 75 years, male 153.4
379_1 60 years, male 152.4
376_1 75 years, female 151.1
189_1 76 years, male 150.4
335_1 73 years, female 149.9
405_1 91 years, male 149.4
173_1 67 years, male 149.1
353_1 82 years, female 148.7
452_1 88 years, female 146.4
246_1 77 years, male 143.5
349_1 83 years, male 143.4
324_1 76 years, male 142.9
377_1 82 years, female 141.5
506_1 65 years, male 141.1
414_1 84 years, female 140.2
350_1 84 years, female 140.1
99_1 64 years, male 139.8
292_1 71 years, male 139.5
415_1 77 years, female 138.3
42_1 85 years, male 138.1
162_1 79 years, female 138.1
526_1 61 years, male 137.6
319_1 81 years, male 137.4
9_1 66 years, female 136.2
115_1 83 years, male 136.2
396_1 62 years, male 136.1
142_1 61 years, female 134.7
18_1 88 years, male 134.5
490_1 67 years, female 134.5
356_1 87 years, female 133.0
137_1 83 years, male 132.4
120_1 70 years, female 132.1
501_1 88 years, male 132.1
318_1 68 years, male 130.5
466_1 57 years, female 130.5
394_1 75 years, female 130.4
447_1 81 years, male 129.4
286_1 68 years, female 128.9
389_1 86 years, female 128.8
468_1 89 years, male 128.1
518_1 75 years, female 128.0
35_1 74 years, female 127.4
406_1 79 years, male 127.3
251_1 78 years, male 127.0
491_1 89 years, female 126.8
315_1 62 years, female 126.5
313_1 79 years, female 126.2
117_1 61 years, male 125.8
266_1 85 years, male 125.3
126_1 63 years, male 124.8
218_1 71 years, female 124.4
354_1 81 years, female 123.2
217_1 76 years, male 123.1
320_1 89 years, female 123.1
265_1 87 years, male 122.8
384_1 83 years, male 122.7
145_1 84 years, male 122.5
81_1 67 years, male 122.4
351_1 91 years, male 122.3
6_1 73 years, female 121.9
119_1 70 years, female 121.1
32_1 67 years, male 120.6
503_1 68 years, male 119.9
4_1 88 years, female 119.6
317_1 60 years, male 119.0
109_1 81 years, female 118.7
291_1 76 years, male 118.2
480_1 63 years, male 118.1
295_1 61 years, female 117.8
43_1 64 years, female 117.4
264_1 73 years, female 116.9
17_1 71 years, male 116.4
293_1 68 years, female 116.2
348_1 84 years, male 115.3
254_1 77 years, female 114.9
499_1 55 years, female 113.4
316_1 62 years, male 109.6
517_1 88 years, male 109.5
153_1 70 years, female 109.1
314_1 67 years, male 108.8
149_1 88 years, male 108.0
288_1 66 years, female 107.5
311_1 78 years, male 106.6
307_1 66 years, female 104.9
89_1 63 years, male 103.1
322_1 76 years, male 99.6
139_1 64 years, female 98.9
2_1 77 years, female 96.3
495_1 57 years, female 84.0
308_1 70 years, female 81.7
41_1 94 years, female 81.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

126.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 126.0
FF:10030-101E3 24-65 years, mixed 126.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.7
Pig sample Sample description nTPM
Retina
nTPM: 123.7
Samples: 4

Max nTPM: 132.8
Min nTPM: 115.3
Sample A Female 119.9
Sample B Female 132.8
Sample C Male 115.3
Sample D Male 126.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

320.3
Mouse sample Sample description nTPM
Retina
nTPM: 320.3
Samples: 4

Max nTPM: 337.9
Min nTPM: 291.2
Sample A Male 337.9
Sample B Male 323.4
Sample C Female 291.2
Sample D Female 328.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org