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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:168.0 nTPM
FANTOM5:266.0 Scaled Tags Per Million
Pig:257.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051497Antibody HPA072453
Glial cells Not detectedMedium
Neuronal cells Not detectedMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 168.0
Samples: 246

Max nTPM: 492.4
Min nTPM: 26.8
Std nTPM: 100.1
Median nTPM: 159.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 492.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 414.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 396.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 378.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 373.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 371.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 370.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 367.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 366.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 364.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 359.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 354.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 349.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 344.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 342.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 340.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 339.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 336.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 333.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 330.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 328.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 326.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 321.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 319.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 318.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 317.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 316.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 303.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 301.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 298.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 295.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 294.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 293.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 293.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 292.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 287.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 286.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 283.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 281.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 279.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 271.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 271.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 269.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 267.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 266.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 265.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 262.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 260.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 254.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 253.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 253.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 251.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 249.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 245.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 244.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 243.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 240.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 239.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 239.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 239.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 237.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 237.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 237.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 236.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 234.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 233.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 232.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 232.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 231.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 227.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 227.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 226.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 222.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 221.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 221.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 217.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 217.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 215.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 214.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 213.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 212.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 212.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 212.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 212.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 210.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 207.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 203.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 203.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 203.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 202.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 202.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 198.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 197.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 197.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 197.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 197.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 194.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 192.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 187.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 185.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 184.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 184.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 183.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 182.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 181.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 178.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 175.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 175.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 173.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 173.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 172.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 171.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 171.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 171.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 170.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 168.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 167.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 165.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 164.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 162.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 161.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 161.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 159.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 158.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 158.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 152.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 150.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 148.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 148.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 146.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 146.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 145.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 145.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 143.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 142.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 140.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 138.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 138.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 138.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 138.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 136.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 136.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 135.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 135.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 134.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 130.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 126.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 124.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 124.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 123.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 122.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 121.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 120.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 115.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 113.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 110.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 106.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 105.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 105.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 103.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 101.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 101.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 100.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 100.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 99.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 99.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 97.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 96.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 96.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 95.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 95.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 95.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 94.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 93.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 93.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 89.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 89.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 88.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 88.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 85.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 84.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 83.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 82.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 81.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 80.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 80.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 75.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 75.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 73.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 72.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 71.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 71.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 70.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 68.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 67.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 64.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 63.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 62.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 62.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 62.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 60.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 59.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 58.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 58.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 57.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 56.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 56.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 54.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 54.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 54.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 54.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 53.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 53.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 52.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 50.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 50.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 50.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 48.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 47.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 47.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 46.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 46.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 46.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 46.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 45.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 44.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 43.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 43.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 43.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 42.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 42.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 42.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 41.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 40.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 38.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 34.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 34.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 33.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 31.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 30.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 30.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 30.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 28.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 28.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 28.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 26.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

266.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 266.0
FF:10164-103B2 76 years, female 266.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

257.5
Pig sample Sample description nTPM
Caudate
nTPM: 257.5
Samples: 4

Max nTPM: 317.2
Min nTPM: 203.5
Sample A Female 203.5
Sample B Female 242.6
Sample C Male 317.2
Sample D Male 266.8

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