We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SMG1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • SMG1
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:112.3 nTPM
Pig:101.7 nTPM
Mouse:10.0 nTPM
Allen mouse:3.4 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 112.3
2396 Male, age 61, right hemisphere 123.1
2497 Male, age 66, unknown 112.1
2032 Female, age 42, unknown 101.6
Centromedial thalamic nucleus
nTPM: 97.9
2401 Male, age 76, right hemisphere 99.5
2279 Female, age 85, left hemisphere 96.3
Habenula
nTPM: 93.4
2203 Male, age 61, left hemisphere 97.4
2252 Male, age 62, unknown 97.3
2276 Male, age 66, unknown 94.6
1957 Male, age 80, both hemispheres 84.3
Lateral geniculate body
nTPM: 108.1
2575 Female, age 94, right hemisphere 138.0
2857 Male, age 74, right hemisphere 120.2
2659 Male, age 66, unknown 119.2
2841 Male, age 80, both hemispheres 106.5
1953 Male, age 62, unknown 102.4
2399 Male, age 61, left hemisphere 94.2
2035 Female, age 72, unknown 93.6
2106 Female, age 67, right hemisphere 90.6
Lateral thalamic nuclei
nTPM: 101.0
2661 Female, age 72, unknown 115.0
2577 Male, age 74, both hemispheres 98.5
1903 Male, age 76, left hemisphere 98.4
2765 Female, age 67, both hemispheres 98.4
2573 Female, age 94, left hemisphere 95.0
Medial dorsal thalamic nucleus
nTPM: 97.2
2492 Male, age 75, right hemisphere 107.3
2660 Female, age 72, unknown 106.3
2572 Female, age 94, right hemisphere 104.1
2576 Male, age 74, both hemispheres 104.0
2026 Male, age 62, unknown 100.1
2402 Female, age 67, both hemispheres 98.7
2283 Male, age 80, right hemisphere 97.0
2039 Female, age 72, unknown 95.7
1930 Female, age 42, unknown 93.9
2498 Male, age 66, unknown 93.6
1859 Male, age 76, both hemispheres 91.0
1971 Male, age 61, right hemisphere 90.1
1810 Male, age 48, unknown 81.0
Medial geniculate body
nTPM: 95.0
2657 Male, age 74, right hemisphere 110.8
1811 Female, age 42, unknown 102.8
2217 Female, age 72, unknown 98.3
2207 Male, age 80, right hemisphere 96.0
2650 Female, age 94, left hemisphere 93.8
2049 Male, age 76, both hemispheres 87.0
2571 Male, age 75, right hemisphere 76.0
Nucleus reuniens
nTPM: 92.0
2210 Female, age 85, left hemisphere 99.6
2212 Female, age 67, left hemisphere 88.3
2205 Male, age 80, left hemisphere 88.0
Nucleus rhomboideus
nTPM: 94.0
2280 Female, age 85, left hemisphere 100.1
2213 Female, age 67, left hemisphere 96.8
2206 Male, age 80, both hemispheres 85.0
Posterior thalamic nucleus
nTPM: 101.3
2266 Male, age 76, right hemisphere 120.0
2655 Male, age 74, right hemisphere 106.9
2495 Female, age 67, right hemisphere 93.1
2649 Female, age 94, both hemispheres 85.2
Pulvinar
nTPM: 99.9
1929 Male, age 48, unknown 108.5
2724 Male, age 74, right hemisphere 106.2
1899 Female, age 42, unknown 106.0
2214 Male, age 76, right hemisphere 105.7
2499 Male, age 66, unknown 100.3
2496 Female, age 67, right hemisphere 100.0
2582 Female, age 72, unknown 98.3
1972 Male, age 62, unknown 95.6
1932 Male, age 80, right hemisphere 91.3
2398 Male, age 61, left hemisphere 86.8
Subthalamic nucleus
nTPM: 103.8
2658 Male, age 74, both hemispheres 121.1
2216 Male, age 48, unknown 118.6
2056 Female, age 72, unknown 107.0
2275 Male, age 66, unknown 97.9
2124 Male, age 62, unknown 97.6
2779 Female, age 42, unknown 97.0
2282 Male, age 61, both hemispheres 96.2
2406 Female, age 72, unknown 94.7
Ventral posterolateral thalamic nucleus
nTPM: 94.3
2581 Female, age 72, unknown 111.7
2570 Male, age 75, right hemisphere 95.7
2578 Male, age 74, both hemispheres 92.9
2740 Male, age 76, right hemisphere 90.9
2397 Male, age 61, right hemisphere 88.4
2197 Male, age 80, both hemispheres 86.4
Ventral posteromedial thalamic nucleus
nTPM: 99.4
2653 Male, age 74, both hemispheres 110.1
2127 Male, age 76, right hemisphere 108.6
2281 Male, age 75, right hemisphere 99.0
2758 Male, age 80, both hemispheres 91.0
2202 Male, age 61, left hemisphere 88.3
Ventral thalamic nuclei
nTPM: 99.3
2580 Male, age 66, unknown 112.3
2858 Female, age 72, unknown 108.7
2652 Male, age 74, left hemisphere 99.4
1912 Female, age 42, unknown 98.7
2291 Female, age 72, unknown 97.3
2285 Male, age 62, unknown 96.3
2204 Male, age 80, both hemispheres 95.5
1845 Male, age 48, unknown 94.7
1860 Male, age 76, both hemispheres 90.8
Zona incerta
nTPM: 108.5
2822 Male, age 74, right hemisphere 136.7
2403 Male, age 62, unknown 104.8
2215 Male, age 66, unknown 103.8
2663 Female, age 72, unknown 99.6
2208 Male, age 80, right hemisphere 97.8

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.7
Pig sample Sample description nTPM
Thalamus
nTPM: 101.7
Samples: 4

Max nTPM: 126.6
Min nTPM: 86.1
Sample A Female 126.6
Sample B Female 89.8
Sample C Male 104.4
Sample D Male 86.1

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.0
Mouse sample Sample description nTPM
Thalamus
nTPM: 10.1
Samples: 4

Max nTPM: 11.2
Min nTPM: 8.7
Sample A Male 9.5
Sample B Male 10.8
Sample C Female 8.7
Sample D Female 11.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.4
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 3.4
74735092 Antisense, RP_060302_01_C04, Mouse strain C57BL/6J (56 days, male) 3.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org