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TSC22D3
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:414.4 nTPM
HPA:226.7 nTPM
GTEx:414.4 nTPM
FANTOM5:272.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB034364
Glandular cells Low



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

226.7
overview
Male, age 65
Small intestine sample 232
nTPM: 137.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 340
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 293.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 136.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

414.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 414.4
Samples: 187

Max nTPM: 1107.0
Min nTPM: 42.9
Std nTPM: 236.3
Median nTPM: 370.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1107.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1065.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1040.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1008.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 985.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 977.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 966.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 952.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 902.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 890.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 829.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 821.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 821.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 807.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 806.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 761.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 757.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 752.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 747.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 740.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 734.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 732.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 724.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 717.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 714.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 712.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 708.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 706.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 692.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 683.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 682.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 673.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 667.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 655.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 655.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 640.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 618.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 600.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 599.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 588.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 585.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 578.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 577.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 571.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 557.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 554.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 551.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 547.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 544.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 532.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 528.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 523.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 519.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 517.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 514.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 512.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 500.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 499.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 495.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 490.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 484.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 477.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 470.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 469.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 466.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 462.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 458.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 457.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 456.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 455.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 439.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 433.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 433.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 431.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 429.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 420.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 413.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 413.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 412.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 411.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 409.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 406.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 403.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 402.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 401.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 399.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 397.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 387.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 385.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 384.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 384.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 382.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 371.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 370.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 368.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 368.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 366.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 366.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 364.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 361.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 358.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 357.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 353.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 351.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 347.6
GTEX-1192X-2526-SM-59868 50-59 years, male 342.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 341.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 340.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 337.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 337.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 332.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 308.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 301.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 298.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 298.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 293.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 291.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 290.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 285.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 285.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 279.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 275.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 274.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 271.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 271.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 267.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 261.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 257.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 255.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 254.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 253.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 248.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 245.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 244.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 243.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 242.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 241.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 238.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 235.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 235.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 232.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 230.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 229.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 227.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 227.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 226.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 225.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 224.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 223.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 222.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 218.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 216.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 215.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 214.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 212.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 206.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 205.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 190.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 184.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 178.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 177.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 174.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 150.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 150.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 148.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 144.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 142.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 142.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 140.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 138.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 134.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 132.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 121.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 119.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 112.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 110.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 109.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 100.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 94.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 88.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 85.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 76.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 73.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 67.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 59.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 54.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 42.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

272.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 272.3
FF:10024-101D6 15,40,85 years, mixed 272.3

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