MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.7 nTPM
HPA Brain:22.4 nTPM
GTEx:20.7 nTPM
FANTOM5:4.6 Scaled Tags Per Million
Pig:88.4 nTPM
Mouse:96.3 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.5
2586 Male, age 75, left hemisphere 27.6
2219 Male, age 76, both hemispheres 20.4
2666 Male, age 74, left hemisphere 20.0
1827 Male, age 72, unknown 19.3
2411 Female, age 72, unknown 18.3
2828 Female, age 72, unknown 18.3
1833 Male, age 53, unknown 16.9
1870 Female, age 42, unknown 15.7
1830 Male, age 51, unknown 15.0
2019 Male, age 18, unknown 13.6
Dorsal raphe nucleus
nTPM: 21.4
2298 Female, age 72, unknown 26.6
2047 Male, age 72, unknown 22.0
1828 Male, age 53, unknown 20.2
2750 Male, age 76, both hemispheres 19.1
2016 Female, age 72, unknown 19.0
Inferior colliculus
nTPM: 17.3
2849 Male, age 72, unknown 19.1
1848 Female, age 42, unknown 18.0
1890 Male, age 53, unknown 16.4
2097 Female, age 72, unknown 15.9
Median raphe nucleus
nTPM: 21.1
2220 Male, age 76, midline 21.1
Periaquaductal grey, anterior
nTPM: 21.7
2502 Female, age 75, unknown 25.2
1795 Male, age 51, unknown 21.5
1947 Male, age 18, unknown 18.5
Periaquaductal grey, dorsal
nTPM: 20.0
1840 Male, age 53, unknown 27.2
2464 Female, age 72, unknown 19.1
2850 Male, age 76, both hemispheres 17.9
1831 Male, age 72, unknown 15.6
Periaquaductal grey, lateral
nTPM: 16.4
2140 Male, age 76, both hemispheres 18.0
2053 Male, age 18, unknown 17.3
2272 Male, age 74, both hemispheres 14.0
Pretectal area
nTPM: 18.7
2407 Male, age 75, both hemispheres 22.9
2224 Female, age 72, unknown 20.5
2007 Male, age 72, unknown 20.3
1944 Female, age 72, unknown 19.5
2825 Male, age 18, unknown 19.5
1816 Male, age 51, unknown 19.2
2667 Female, age 75, unknown 18.9
2273 Male, age 74, both hemispheres 17.9
1815 Male, age 53, unknown 17.3
1817 Female, age 42, unknown 16.4
2316 Male, age 76, right hemisphere 13.6
Red nucleus
nTPM: 12.0
2584 Male, age 75, left hemisphere 19.5
2227 Male, age 72, unknown 13.6
2588 Male, age 74, left hemisphere 13.4
2785 Male, age 18, unknown 13.2
2769 Male, age 72, unknown 12.8
2725 Female, age 75, unknown 12.6
1821 Female, age 72, unknown 11.1
2503 Female, age 72, unknown 10.7
1904 Male, age 53, unknown 9.8
1954 Female, age 42, unknown 9.7
2823 Male, age 76, right hemisphere 9.0
1865 Male, age 51, unknown 8.7
Substantia nigra
nTPM: 22.4
1916 Female, age 42, unknown 31.8
2665 Male, age 74, both hemispheres 27.5
1851 Male, age 51, unknown 26.4
2699 Male, age 18, unknown 26.0
2241 Male, age 72, unknown 23.3
1941 Male, age 53, unknown 22.2
1889 Female, age 72, unknown 20.0
2583 Male, age 75, right hemisphere 18.3
2590 Female, age 75, unknown 17.4
2409 Female, age 72, unknown 11.1
Superior colliculus
nTPM: 18.1
2664 Male, age 75, both hemispheres 31.5
1796 Male, age 53, unknown 20.2
2587 Male, age 74, left hemisphere 19.0
2087 Female, age 72, unknown 18.4
1839 Male, age 51, unknown 18.3
2261 Male, age 18, unknown 18.1
2668 Female, age 75, unknown 17.1
1895 Male, age 76, right hemisphere 15.7
1995 Male, age 72, unknown 12.1
1913 Female, age 42, unknown 10.9
Ventral tegmental area
nTPM: 20.1
1942 Male, age 51, unknown 24.3
1915 Female, age 42, unknown 23.0
2218 Male, age 76, both hemispheres 21.0
2021 Male, age 53, unknown 18.5
2410 Female, age 72, unknown 18.2
2223 Female, age 72, unknown 15.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.7
Samples: 139

Max nTPM: 46.5
Min nTPM: 5.8
Std nTPM: 9.0
Median nTPM: 19.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 46.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 42.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 41.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 41.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 40.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 40.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 39.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 39.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 38.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 36.6
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 36.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 4.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.6
FF:10158-103A5 76 years, female 4.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 88.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 87.6
Samples: 4

Max nTPM: 135.2
Min nTPM: 35.4
Sample A Female 135.2
Sample B Female 67.6
Sample C Male 112.2
Sample D Male 35.4
Midbrain
nTPM: 88.4
Samples: 4

Max nTPM: 112.0
Min nTPM: 64.0
Sample A Female 64.0
Sample B Female 112.0
Sample C Male 99.1
Sample D Male 78.6
Periaqueductal gray
nTPM: 88.4
Samples: 3

Max nTPM: 104.7
Min nTPM: 72.6
Sample B Female 87.8
Sample C Male 104.7
Sample D Male 72.6
Superior colliculi
nTPM: 87.3
Samples: 4

Max nTPM: 114.1
Min nTPM: 50.8
Sample A Female 105.8
Sample B Female 50.8
Sample C Male 114.1
Sample D Male 78.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 96.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.3
Samples: 4

Max nTPM: 111.4
Min nTPM: 80.8
Sample A Male 111.4
Sample B Male 96.2
Sample C Female 80.8
Sample D Female 96.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
75692770 Antisense, RP_051214_02_B11, Mouse strain C57BL/6J (56 days, male) 2.4
74047901 Antisense, RP_051214_02_B11, Mouse strain C57BL/6J (56 days, male) 1.0

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