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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:227.7 nTPM
GTEx:227.7 nTPM
FANTOM5:19.6 Scaled Tags Per Million
Pig:88.7 nTPM
Mouse:0.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

227.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 227.7
Samples: 105

Max nTPM: 436.4
Min nTPM: 81.1
Std nTPM: 84.5
Median nTPM:
414_1 84 years, female 436.4
415_1 77 years, female 420.4
237_1 82 years, male 418.0
490_1 67 years, female 406.9
355_1 70 years, female 388.7
265_1 87 years, male 383.1
217_1 76 years, male 381.3
246_1 77 years, male 380.3
375_1 74 years, female 377.4
162_1 79 years, female 375.9
142_1 61 years, female 370.8
32_1 67 years, male 353.4
352_1 62 years, male 341.6
466_1 57 years, female 334.8
229_1 69 years, female 334.2
35_1 74 years, female 329.0
389_1 86 years, female 326.0
42_1 85 years, male 319.8
266_1 85 years, male 319.2
379_1 60 years, male 309.8
81_1 67 years, male 305.8
172_1 72 years, female 303.8
115_1 83 years, male 295.9
491_1 89 years, female 295.5
149_1 88 years, male 284.8
126_1 63 years, male 281.6
468_1 89 years, male 272.4
254_1 77 years, female 272.1
243_1 75 years, male 271.5
413_1 59 years, female 269.5
394_1 75 years, female 269.1
354_1 81 years, female 255.5
425_1 59 years, female 255.1
404_1 82 years, female 253.7
347_1 72 years, male 249.8
386_1 76 years, male 247.0
503_1 68 years, male 244.5
405_1 91 years, male 243.0
384_1 83 years, male 239.9
153_1 70 years, female 239.7
9_1 66 years, female 237.5
99_1 64 years, male 236.8
89_1 63 years, male 236.6
377_1 82 years, female 235.7
43_1 64 years, female 234.2
526_1 61 years, male 233.0
6_1 73 years, female 228.7
447_1 81 years, male 221.3
517_1 88 years, male 219.1
356_1 87 years, female 214.8
189_1 76 years, male 213.9
120_1 70 years, female 213.7
307_1 66 years, female 213.2
349_1 83 years, male 212.2
396_1 62 years, male 211.2
286_1 68 years, female 211.0
117_1 61 years, male 210.5
109_1 81 years, female 207.2
319_1 81 years, male 198.9
119_1 70 years, female 198.7
315_1 62 years, female 198.7
324_1 76 years, male 198.6
313_1 79 years, female 197.2
452_1 88 years, female 193.9
291_1 76 years, male 192.0
17_1 71 years, male 188.5
218_1 71 years, female 185.1
18_1 88 years, male 182.4
350_1 84 years, female 180.8
348_1 84 years, male 178.3
173_1 67 years, male 177.9
163_1 78 years, male 177.2
321_1 62 years, female 176.3
314_1 67 years, male 176.0
137_1 83 years, male 175.4
177_1 74 years, male 174.6
376_1 75 years, female 172.6
251_1 78 years, male 169.1
499_1 55 years, female 167.0
264_1 73 years, female 164.4
351_1 91 years, male 162.2
480_1 63 years, male 162.1
292_1 71 years, male 159.9
318_1 68 years, male 159.3
145_1 84 years, male 155.5
139_1 64 years, female 147.6
288_1 66 years, female 146.3
518_1 75 years, female 146.3
4_1 88 years, female 144.7
335_1 73 years, female 143.1
353_1 82 years, female 131.1
41_1 94 years, female 130.1
316_1 62 years, male 127.8
320_1 89 years, female 126.9
311_1 78 years, male 124.9
295_1 61 years, female 120.0
506_1 65 years, male 118.4
293_1 68 years, female 117.6
317_1 60 years, male 114.8
501_1 88 years, male 114.5
2_1 77 years, female 107.7
322_1 76 years, male 107.0
406_1 79 years, male 93.5
308_1 70 years, female 93.2
495_1 57 years, female 81.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

19.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 19.6
FF:10030-101E3 24-65 years, mixed 19.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.7
Pig sample Sample description nTPM
Retina
nTPM: 88.7
Samples: 4

Max nTPM: 98.0
Min nTPM: 71.7
Sample A Female 87.3
Sample B Female 71.7
Sample C Male 98.0
Sample D Male 97.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Mouse sample Sample description nTPM
Retina
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

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