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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:111.7 nTPM
FANTOM5:163.2 Scaled Tags Per Million
Pig:69.8 nTPM

CAUDATE - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA007394Antibody CAB026132
Glial cells MediumMedium
Neuronal cells HighMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 111.7
Samples: 246

Max nTPM: 224.9
Min nTPM: 40.2
Std nTPM: 31.7
Median nTPM: 110.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 224.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 202.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 199.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 197.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 195.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 189.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 189.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 186.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 179.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 178.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 176.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 175.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 175.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 172.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 166.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 166.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 165.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 161.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 160.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 160.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 159.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 152.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 152.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 152.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 151.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 151.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 149.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 149.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 148.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 146.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 146.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 145.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 145.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 144.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 144.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 143.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 142.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 142.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 142.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 141.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 141.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 140.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 140.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 140.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 139.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 138.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 138.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 138.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 137.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 136.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 134.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 134.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 133.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 133.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 132.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 132.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 131.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 131.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 129.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 128.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 128.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 128.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 128.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 127.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 127.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 127.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 126.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 126.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 126.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 125.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 124.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 124.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 124.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 123.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 122.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 122.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 122.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 122.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 122.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 121.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 121.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 121.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 121.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 120.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 120.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 120.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 119.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 119.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 119.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 119.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 119.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 118.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 118.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 118.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 117.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 117.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 117.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 117.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 117.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 116.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 116.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 116.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 116.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 115.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 115.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 115.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 115.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 114.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 114.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 113.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 113.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 113.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 113.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 112.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 112.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 111.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 111.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 111.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 110.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 110.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 110.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 110.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 110.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 110.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 109.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 108.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 108.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 107.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 107.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 107.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 107.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 106.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 106.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 106.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 105.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 105.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 105.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 104.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 103.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 103.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 102.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 101.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 101.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 101.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 101.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 101.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 100.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 100.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 100.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 99.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 98.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 98.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 98.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 98.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 98.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 97.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 97.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 96.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 96.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 96.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 95.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 94.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 94.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 94.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 94.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 93.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 93.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 93.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 93.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 93.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 92.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 92.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 92.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 92.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 91.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 91.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 91.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 90.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 90.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 90.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 90.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 89.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 89.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 89.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 89.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 88.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 88.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 87.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 87.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 86.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 86.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 86.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 86.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 85.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 85.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 84.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 84.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 83.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 83.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 83.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 82.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 82.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 82.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 82.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 81.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 81.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 81.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 81.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 81.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 81.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 80.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 80.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 79.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 79.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 78.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 78.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 78.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 78.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 77.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 77.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 76.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 76.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 75.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 75.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 74.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 73.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 73.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 72.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 72.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 72.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 71.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 71.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 70.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 69.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 67.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 67.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 66.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 64.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 60.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 58.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 56.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 56.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 45.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 44.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 40.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 40.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

163.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 163.2
FF:10164-103B2 76 years, female 163.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.8
Pig sample Sample description nTPM
Caudate
nTPM: 69.8
Samples: 4

Max nTPM: 81.2
Min nTPM: 53.6
Sample A Female 53.6
Sample B Female 77.7
Sample C Male 81.2
Sample D Male 66.5

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