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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:150.4 nTPM
HPA Brain:257.3 nTPM
GTEx:150.4 nTPM
FANTOM5:87.7 Scaled Tags Per Million
Pig:159.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

257.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 199.9
2565 Male, age 75, midline 253.7
2194 Female, age 79, both hemispheres 221.4
1981 Female, age 72, midline 202.5
2816 Male, age 47, midline 165.8
2048 Male, age 55, midline 156.2
Cervical spinal cord, dorsal horn
nTPM: 177.7
2173 Female, age 72, unknown 238.6
2297 Male, age 75, both hemispheres 184.6
2069 Male, age 47, both hemispheres 169.2
2296 Male, age 66, both hemispheres 166.3
1877 Male, age 55, unknown 154.9
2721 Male, age 90, both hemispheres 152.8
Cervical spinal cord, ventral horn
nTPM: 257.3
2480 Male, age 75, both hemispheres 341.1
2809 Male, age 90, both hemispheres 296.1
2295 Male, age 66, both hemispheres 289.5
2068 Male, age 55, unknown 224.8
2820 Female, age 79, both hemispheres 216.8
2098 Female, age 72, unknown 175.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 150.4
Samples: 159

Max nTPM: 273.1
Min nTPM: 83.2
Std nTPM: 40.4
Median nTPM: 144.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 273.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 264.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 262.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 260.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 239.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 237.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 236.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 231.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 230.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 230.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 226.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 225.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 225.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 221.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 216.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 206.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 205.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 202.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 201.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 201.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 201.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 201.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 199.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 196.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 191.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 190.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 186.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 185.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 185.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 184.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 183.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 182.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 178.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 178.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 177.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 177.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 177.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 177.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 176.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 176.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 174.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 173.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 170.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 169.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 166.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 166.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 165.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 163.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 162.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 160.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 160.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 160.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 159.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 159.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 157.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 157.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 156.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 156.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 155.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 154.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 153.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 152.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 152.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 151.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 150.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 150.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 150.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 149.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 149.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 149.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 148.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 147.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 147.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 147.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 145.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 145.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 145.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 144.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 144.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 144.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 143.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 143.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 140.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 140.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 138.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 138.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 137.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 136.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 136.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 135.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 135.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 134.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 134.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 134.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 134.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 133.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 133.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 132.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 132.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 131.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 130.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 130.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 130.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 128.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 128.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 128.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 127.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 127.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 127.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 127.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 127.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 125.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 123.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 123.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 123.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 123.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 123.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 122.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 122.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 121.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 120.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 118.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 117.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 117.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 117.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 115.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 114.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 114.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 113.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 112.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 112.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 111.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 111.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 111.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 111.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 111.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 110.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 110.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 110.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 108.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 106.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 106.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 104.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 104.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 104.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 104.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 103.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 102.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 101.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 101.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 100.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 97.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 97.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 97.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 91.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 91.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 89.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 85.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 83.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

87.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 87.7
FF:10159-103A6 76 years, female 95.3
FF:10181-103D1 60 years, female 80.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 133.1
Samples: 4

Max nTPM: 146.6
Min nTPM: 123.8
Sample A Female 126.8
Sample B Female 146.6
Sample C Male 123.8
Sample D Male 135.1
Ventral spinal cord
nTPM: 159.8
Samples: 4

Max nTPM: 178.9
Min nTPM: 143.6
Sample A Female 146.0
Sample B Female 178.9
Sample C Male 143.6
Sample D Male 170.7

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