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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:209.7 nTPM
HPA Brain:386.0 nTPM
GTEx:209.7 nTPM
FANTOM5:332.3 Scaled Tags Per Million
Pig:89.1 nTPM
Mouse:201.6 nTPM
Allen mouse:18.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

386.0
Sample id Sample description nTPM
Amygdala
nTPM: 219.6
2517 Female, age 94, left hemisphere 286.5
1987 Female, age 91, left hemisphere 252.7
2814 Male, age 76, right hemisphere 248.7
2514 Male, age 75, right hemisphere 184.9
2695 Female, age 67, right hemisphere 124.9
Basal amygdala
nTPM: 386.0
2243 Female, age 91, right hemisphere 502.9
2685 Female, age 94, left hemisphere 452.2
2827 Female, age 67, right hemisphere 380.1
2110 Male, age 80, left hemisphere 363.9
2609 Male, age 75, right hemisphere 338.2
1955 Male, age 76, both hemispheres 278.8
Central amygdala
nTPM: 304.6
2826 Female, age 94, left hemisphere 448.5
2239 Male, age 80, left hemisphere 340.6
2701 Female, age 91, right hemisphere 262.7
2515 Male, age 75, right hemisphere 256.9
1905 Male, age 76, both hemispheres 214.4
Corticomedial amygdala
nTPM: 357.2
2535 Female, age 67, right hemisphere 500.9
2829 Male, age 80, left hemisphere 407.6
2242 Female, age 91, right hemisphere 387.8
2429 Female, age 94, left hemisphere 323.8
2428 Male, age 75, right hemisphere 269.7
2240 Male, age 76, both hemispheres 253.5
Lateral amygdala
nTPM: 301.4
2534 Female, age 94, left hemisphere 492.3
2256 Male, age 80, left hemisphere 358.3
2255 Female, age 91, right hemisphere 312.1
1883 Male, age 76, both hemispheres 236.1
2516 Male, age 75, right hemisphere 205.4
2830 Female, age 67, right hemisphere 204.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

209.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 209.7
Samples: 152

Max nTPM: 681.6
Min nTPM: 14.5
Std nTPM: 106.4
Median nTPM: 195.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 681.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 532.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 481.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 450.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 408.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 393.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 392.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 388.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 374.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 373.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 369.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 354.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 350.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 340.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 339.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 338.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 337.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 334.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 330.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 328.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 326.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 325.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 323.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 320.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 317.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 313.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 309.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 308.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 307.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 307.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 306.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 305.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 300.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 298.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 295.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 287.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 287.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 286.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 285.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 284.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 279.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 276.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 267.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 266.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 263.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 262.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 258.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 256.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 255.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 254.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 249.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 248.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 245.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 244.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 242.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 241.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 238.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 236.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 234.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 232.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 230.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 226.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 224.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 221.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 218.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 217.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 213.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 210.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 210.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 209.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 209.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 205.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 204.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 201.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 200.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 199.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 192.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 179.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 179.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 178.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 175.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 173.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 172.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 170.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 166.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 164.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 163.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 163.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 163.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 162.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 162.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 161.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 154.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 153.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 153.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 152.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 150.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 145.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 143.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 141.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 140.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 140.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 138.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 138.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 136.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 136.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 136.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 135.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 134.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 132.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 130.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 130.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 129.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 128.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 128.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 124.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 124.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 122.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 122.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 121.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 121.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 120.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 118.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 116.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 115.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 113.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 112.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 112.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 112.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 111.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 110.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 104.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 103.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 101.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 99.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 99.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 99.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 95.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 93.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 87.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 84.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 83.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 80.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 80.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 70.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 69.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 60.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 58.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 42.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 39.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 26.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 14.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

332.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 332.3
FF:10151-102I7 76 years, female 332.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.1
Pig sample Sample description nTPM
Amygdala
nTPM: 89.1
Samples: 4

Max nTPM: 141.6
Min nTPM: 56.7
Sample A Female 141.6
Sample B Female 56.7
Sample C Male 71.6
Sample D Male 86.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 201.7
Samples: 4

Max nTPM: 221.6
Min nTPM: 190.0
Sample A Male 190.0
Sample B Male 196.9
Sample C Female 221.6
Sample D Female 198.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.4
79544804 Antisense, RP_071018_01_E09, Mouse strain C57BL/6J (56 days, male) 18.4

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