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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:190.3 nTPM
FANTOM5:334.8 Scaled Tags Per Million
Pig:177.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA024290Antibody HPA058487
Glial cells LowNot detected
Neuronal cells MediumNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 190.3
Samples: 246

Max nTPM: 440.1
Min nTPM: 34.9
Std nTPM: 89.3
Median nTPM: 184.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 440.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 423.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 398.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 395.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 391.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 387.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 384.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 371.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 365.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 355.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 354.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 354.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 351.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 344.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 343.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 335.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 333.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 332.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 331.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 331.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 324.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 323.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 317.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 316.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 316.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 315.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 312.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 312.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 308.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 302.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 298.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 298.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 297.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 295.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 294.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 292.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 292.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 290.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 289.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 287.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 284.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 284.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 284.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 283.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 282.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 279.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 279.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 276.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 268.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 268.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 266.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 266.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 260.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 258.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 257.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 257.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 257.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 255.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 255.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 255.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 252.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 251.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 250.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 248.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 246.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 245.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 245.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 243.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 242.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 239.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 238.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 238.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 237.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 235.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 235.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 233.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 232.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 231.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 229.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 229.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 229.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 228.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 226.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 225.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 225.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 224.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 224.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 223.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 222.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 221.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 219.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 219.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 218.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 218.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 217.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 216.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 214.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 213.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 213.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 212.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 211.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 207.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 206.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 205.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 204.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 201.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 198.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 198.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 197.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 196.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 196.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 196.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 195.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 194.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 194.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 193.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 193.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 189.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 188.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 188.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 185.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 184.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 184.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 184.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 183.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 183.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 181.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 180.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 180.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 179.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 178.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 177.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 175.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 174.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 171.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 168.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 168.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 166.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 166.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 164.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 161.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 161.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 160.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 160.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 160.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 160.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 159.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 159.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 156.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 155.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 154.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 152.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 151.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 150.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 148.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 146.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 145.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 142.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 141.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 141.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 139.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 138.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 137.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 136.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 136.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 135.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 134.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 132.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 131.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 128.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 128.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 126.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 125.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 125.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 124.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 123.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 122.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 122.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 120.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 119.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 118.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 117.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 116.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 115.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 115.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 114.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 113.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 111.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 109.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 109.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 108.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 106.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 105.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 104.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 104.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 102.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 101.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 100.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 99.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 99.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 97.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 96.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 95.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 94.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 94.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 94.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 93.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 93.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 92.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 92.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 89.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 89.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 88.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 85.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 85.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 83.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 81.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 81.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 80.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 79.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 78.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 78.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 78.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 77.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 76.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 75.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 74.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 73.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 72.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 71.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 70.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 70.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 69.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 68.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 66.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 66.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 64.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 62.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 56.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 52.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 52.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 52.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 45.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 41.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 37.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 34.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

334.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 334.8
FF:10164-103B2 76 years, female 334.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

177.0
Pig sample Sample description nTPM
Caudate
nTPM: 177.0
Samples: 4

Max nTPM: 218.9
Min nTPM: 148.4
Sample A Female 148.4
Sample B Female 179.3
Sample C Male 218.9
Sample D Male 161.2

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