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  • SUMMARY

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  • APOA2
CANCER LIVER CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
LIHC TCGA LIHC VALIDATION PROTEIN LIHC CPTAC PROTEIN EXPRESSION
ANTIBODIES
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VALIDATION
Dictionary
Liver cancer
Human cancer
Liver hepatocellular carcinoma
LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

APOA2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)


Stage:


Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

: 55825.4
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average pTPM 39828.6
Number of samples 362
Samples
Sample Description pTPM
TCGA-DD-AAE6-01A 59 years, female, asian, stage:Stage I, alive, 141 days 145565.0
TCGA-DD-AADK-01A 68 years, female, asian, stage:Stage II, alive, 1049 days 130459.0
TCGA-CC-5259-01A 60 years, female, asian, stage:Stage IIIC, alive, 250 days 122510.0
TCGA-DD-A116-01A 68 years, male, asian, stage:Stage IIIA, dead, 1622 days 121553.0
TCGA-ES-A2HT-01A 54 years, male, black or african american, stage:Stage I, dead, 438 days 120092.0
TCGA-BC-A5W4-01A 69 years, male, white, stage:Stage IIIA, dead, 547 days 114245.0
TCGA-DD-A39X-01A 78 years, female, white, stage:Stage I, dead, 1694 days 107697.0
TCGA-DD-AADO-01A 55 years, male, asian, stage:Stage I, alive, 453 days 104910.0
TCGA-CC-A5UC-01A 63 years, male, asian, stage:Stage IIIA, dead, 347 days 104578.0
TCGA-DD-AADU-01A 60 years, male, asian, stage:Stage II, alive, 554 days 103511.0
TCGA-G3-AAV5-01A 67 years, male, white, stage:Stage II, alive, 354 days 102896.0
TCGA-2Y-A9H7-01A 81 years, female, white, stage:Stage I, alive, 1168 days 100978.0
TCGA-DD-AADN-01A 59 years, male, asian, stage:Stage I, alive, 898 days 99939.4
TCGA-DD-AAE1-01A 52 years, male, asian, stage:Stage I, alive, 552 days 93723.5
TCGA-DD-A39Y-01A 67 years, male, asian, stage:Stage I, dead, 171 days 91482.1
TCGA-DD-A3A3-01A 45 years, male, asian, stage:Stage I, dead, 535 days 90609.6
TCGA-G3-A25S-01A 64 years, male, white, stage:Stage I, dead, 416 days 90480.2
TCGA-CC-A7IE-01A 57 years, male, asian, stage:Stage IIIA, dead, 217 days 90322.8
TCGA-DD-A73B-01A 72 years, female, white, stage:Stage I, dead, 283 days 90220.0
TCGA-DD-AAEB-01A 60 years, male, asian, stage:Stage I, alive, 478 days 89170.2
TCGA-DD-A39Z-01A 43 years, female, stage:Stage II, dead, 601 days 88121.0
TCGA-DD-AACO-01A 40 years, male, asian, stage:Stage I, alive, 1876 days 86907.6
TCGA-EP-A2KB-01A 46 years, female, white, stage:Stage I, dead, 596 days 86208.6
TCGA-KR-A7K2-01A 64 years, male, white, stage:Stage I, alive, 829 days 85473.5
TCGA-ES-A2HS-01A 80 years, male, white, stage:Stage I, dead, 688 days 85422.3
TCGA-DD-A1EJ-01A 71 years, female, white, stage:Stage IIIC, dead, 1005 days 85172.4
TCGA-T1-A6J8-01A 68 years, male, white, stage:'--, alive, 23 days 84799.3
TCGA-DD-AACL-01A 66 years, female, asian, stage:Stage I, dead, 107 days 84334.3
TCGA-DD-A119-01A 40 years, male, asian, stage:Stage IV, dead, 223 days 84125.3
TCGA-DD-AADA-01A 66 years, female, asian, stage:Stage I, alive, 1233 days 83322.6
TCGA-DD-AAW0-01A 54 years, male, asian, stage:Stage I, alive, 2015 days 82058.3
TCGA-BC-A10U-01A 69 years, male, white, stage:'--, dead, 837 days 81757.4
TCGA-DD-AAVW-01A 35 years, male, asian, stage:Stage I, alive, 2317 days 80010.1
TCGA-DD-AACC-01A 61 years, male, asian, stage:Stage I, dead, 1685 days 78927.3
TCGA-DD-AADJ-01A 70 years, female, asian, stage:Stage I, alive, 1066 days 78098.1
TCGA-O8-A75V-01A 54 years, male, stage:Stage I, alive, 538 days 77339.7
TCGA-DD-A73G-01A 73 years, female, white, stage:Stage I, alive, 3478 days 77279.7
TCGA-G3-A3CG-01A 80 years, male, white, stage:Stage I, alive, 673 days 75612.1
TCGA-G3-AAV6-01A 53 years, female, white, stage:Stage IIIA, dead, 65 days 75535.0
TCGA-ED-A7PY-01A 20 years, female, asian, stage:Stage II, alive, 390 days 75001.0
TCGA-FV-A2QR-01A 75 years, male, white, stage:Stage I, dead, 581 days 73494.1
TCGA-CC-A7IL-01A 61 years, male, asian, stage:Stage IIIA, dead, 278 days 73172.8
TCGA-BC-A3KF-01A 66 years, female, white, stage:Stage I, alive, 8 days 72712.6
TCGA-CC-A123-01A 24 years, female, asian, stage:Stage IIIA, alive, 219 days 72510.7
TCGA-5C-A9VH-01A 70 years, male, white, stage:Stage I, alive, 322 days 72179.7
TCGA-2Y-A9HB-01A 66 years, male, stage:Stage I, alive, 260 days 71487.3
TCGA-DD-AACW-01A 43 years, male, asian, stage:Stage I, alive, 1424 days 70326.5
TCGA-ED-A7XP-01A 53 years, female, asian, stage:Stage II, alive, 400 days 70305.3
TCGA-FV-A496-01A 84 years, female, white, stage:Stage I, alive, 10 days 70247.2
TCGA-BC-A69H-01A 64 years, male, white, stage:Stage II, alive, 444 days 68841.1
TCGA-DD-AADY-01A 55 years, female, asian, stage:Stage I, alive, 555 days 68747.9
TCGA-WQ-A9G7-01A 71 years, female, white, stage:'--, alive, 30 days 68608.3
TCGA-CC-5262-01A 67 years, male, asian, stage:Stage IIIC, dead, 103 days 68163.7
TCGA-DD-AACJ-01A 75 years, male, asian, stage:Stage II, alive, 2102 days 68095.0
TCGA-DD-AAE9-01A 69 years, male, asian, stage:Stage I, alive, 722 days 68080.4
TCGA-FV-A2QQ-01A 80 years, male, white, stage:Stage I, alive, 729 days 67711.1
TCGA-DD-AAVZ-01A 38 years, male, asian, stage:Stage I, alive, 1900 days 67473.7
TCGA-EP-A3JL-01A 76 years, male, white, stage:Stage I, alive, 303 days 67471.3
TCGA-DD-A3A7-01A 67 years, male, stage:Stage IIIB, dead, 419 days 67171.0
TCGA-2Y-A9H0-01A 49 years, male, white, stage:Stage IIIA, alive, 3675 days 67090.3
TCGA-DD-AAW1-01A 55 years, male, asian, stage:Stage IIIA, alive, 1989 days 66936.3
TCGA-CC-5258-01A 48 years, male, asian, stage:Stage II, dead, 129 days 66537.2
TCGA-DD-AAED-01A 51 years, male, asian, stage:Stage I, alive, 763 days 65730.4
TCGA-GJ-A6C0-01A 75 years, female, white, stage:Stage II, dead, 31 days 65386.0
TCGA-DD-AACZ-01A 63 years, female, asian, stage:Stage I, dead, 171 days 65105.4
TCGA-DD-A3A8-01A 75 years, male, white, stage:Stage II, dead, 11 days 64585.7
TCGA-DD-A39V-01A 77 years, male, white, stage:Stage II, dead, 643 days 64348.2
TCGA-DD-AADP-01A 45 years, male, asian, stage:Stage I, alive, 458 days 63870.8
TCGA-MI-A75G-01A 63 years, male, white, stage:Stage II, alive, 698 days 63064.0
TCGA-MI-A75I-01A 61 years, male, black or african american, stage:'--, alive, 630 days 63023.0
TCGA-DD-AAD0-01A 73 years, female, asian, stage:Stage I, alive, 137 days 62995.9
TCGA-K7-A6G5-01A 66 years, male, white, stage:Stage I, alive, 512 days 62583.3
TCGA-ED-A8O5-01A 59 years, female, asian, stage:Stage IIIA, alive, 406 days 62413.8
TCGA-GJ-A3OU-01A 59 years, male, white, stage:Stage I, alive, 879 days 60318.0
TCGA-DD-AADF-01A 64 years, female, asian, stage:Stage I, dead, 115 days 59754.8
TCGA-DD-A1EI-01A 46 years, male, asian, stage:Stage I, alive, 183 days 59426.1
TCGA-RG-A7D4-01A 69 years, male, black or african american, stage:Stage II, alive, 1098 days 59205.2
TCGA-MI-A75C-01A 64 years, male, white, stage:Stage I, alive, 291 days 58769.4
TCGA-DD-AADR-01A 58 years, male, asian, stage:Stage I, alive, 2028 days 58587.2
TCGA-DD-A3A9-01A 64 years, female, white, stage:Stage IVB, dead, 931 days 58578.7
TCGA-DD-A1EG-01A 76 years, male, white, stage:Stage I, dead, 1372 days 58286.3
TCGA-CC-A9FS-01A 55 years, male, asian, stage:Stage II, alive, 211 days 58033.3
TCGA-DD-AAVR-01A 44 years, male, asian, stage:Stage I, alive, 2513 days 57946.2
TCGA-G3-AAV4-01A 83 years, female, white, stage:Stage I, dead, 27 days 57068.6
TCGA-2Y-A9H3-01A 45 years, male, white, stage:Stage II, alive, 1516 days 56973.3
TCGA-G3-A5SI-01A 44 years, male, asian, stage:Stage II, dead, 768 days 56927.2
TCGA-RC-A7SF-01A 66 years, male, asian, stage:Stage I, alive, 579 days 56771.6
TCGA-2Y-A9H1-01A 58 years, male, white, stage:Stage I, dead, 1229 days 56702.6
TCGA-DD-AAEA-01A 65 years, male, asian, stage:Stage I, alive, 575 days 56479.6
TCGA-CC-A7IG-01A 47 years, male, asian, stage:Stage II, dead, 299 days 56412.3
TCGA-EP-A2KC-01A 62 years, male, black or african american, stage:Stage I, dead, 19 days 56070.9
TCGA-DD-A4NN-01A 56 years, female, white, stage:Stage I, dead, 899 days 55825.4
TCGA-DD-AAEE-01A 55 years, male, asian, stage:Stage I, alive, 810 days 55045.7
TCGA-NI-A4U2-01A 71 years, male, white, stage:Stage IIIA, dead, 1791 days 54747.4
TCGA-DD-AACP-01A 64 years, male, asian, stage:Stage I, alive, 415 days 54710.7
TCGA-DD-AADS-01A 63 years, male, asian, stage:Stage I, alive, 474 days 54309.1
TCGA-XR-A8TC-01A 43 years, female, white, stage:Stage I, alive, 1339 days 54192.5
TCGA-MI-A75H-01A 77 years, male, white, stage:'--, alive, 747 days 54079.0
TCGA-ZP-A9D0-01A 67 years, female, black or african american, stage:'--, alive, 1091 days 54076.0
TCGA-2Y-A9GY-01A 64 years, female, white, stage:Stage II, dead, 757 days 53756.9
TCGA-DD-A4NH-01A 65 years, female, white, stage:Stage IIIB, alive, 917 days 53659.5
TCGA-DD-AADI-01A 43 years, female, asian, stage:Stage I, alive, 1085 days 53332.3
TCGA-DD-AAVU-01A 46 years, male, asian, stage:Stage II, alive, 2202 days 52724.3
TCGA-RC-A7SB-01A 53 years, male, asian, stage:Stage II, alive, 588 days 52378.1
TCGA-FV-A495-01A 51 years, female, white, stage:Stage II, alive, 1 days 52369.2
TCGA-DD-AAVY-01A 56 years, male, asian, stage:Stage IIIA, alive, 1970 days 51578.1
TCGA-CC-A8HU-01A 39 years, female, asian, stage:Stage IIIA, dead, 344 days 51440.3
TCGA-DD-AACQ-01A 50 years, male, asian, stage:Stage II, dead, 432 days 51263.1
TCGA-RC-A7S9-01A 47 years, female, asian, stage:Stage I, alive, 640 days 51217.2
TCGA-DD-A1EK-01A 64 years, female, white, stage:Stage IVB, dead, 558 days 51210.1
TCGA-ZS-A9CE-01A 79 years, female, white, stage:Stage II, alive, 1241 days 50665.9
TCGA-G3-A5SL-01A 70 years, male, white, stage:Stage II, alive, 621 days 50457.9
TCGA-G3-AAV2-01A 50 years, male, white, stage:Stage I, alive, 372 days 50159.7
TCGA-DD-AADD-01A 51 years, male, asian, stage:Stage I, alive, 1231 days 50121.1
TCGA-DD-AACE-01A 62 years, male, asian, stage:Stage I, alive, 2184 days 49942.0
TCGA-ZP-A9CZ-01A 72 years, male, asian, stage:'--, alive, 706 days 49231.1
TCGA-DD-AAC9-01A 51 years, male, asian, stage:Stage I, alive, 347 days 49092.1
TCGA-2Y-A9HA-01A 70 years, male, white, stage:Stage II, dead, 36 days 48850.2
TCGA-2Y-A9GU-01A 55 years, female, white, stage:Stage I, alive, 1939 days 48749.9
TCGA-KR-A7K0-01A 65 years, male, white, stage:Stage I, dead, 65 days 48653.5
TCGA-2Y-A9H6-01A 68 years, female, white, stage:Stage I, alive, 357 days 48555.6
TCGA-DD-AAC8-01A 72 years, male, asian, stage:Stage I, dead, 16 days 48215.2
TCGA-G3-AAV0-01A 58 years, male, asian, stage:Stage I, alive, 476 days 48194.8
TCGA-KR-A7K7-01A 61 years, female, white, stage:Stage II, alive, 951 days 48029.4
TCGA-DD-AADG-01A 70 years, male, asian, stage:Stage IIIA, alive, 1145 days 47745.7
TCGA-DD-A73D-01A 68 years, female, white, stage:Stage II, alive, 693 days 47600.3
TCGA-ZS-A9CG-01A 55 years, male, white, stage:Stage II, alive, 341 days 47331.0
TCGA-G3-A5SM-01A 58 years, male, white, stage:Stage II, alive, 520 days 47111.6
TCGA-ED-A8O6-01A 50 years, female, asian, stage:Stage IIIA, dead, 56 days 47035.0
TCGA-XR-A8TF-01A 74 years, male, white, stage:Stage I, dead, 693 days 47000.7
TCGA-WX-AA44-01A 64 years, female, white, stage:Stage I, alive, 615 days 46390.1
TCGA-DD-AAD6-01A 66 years, male, asian, stage:Stage IIIA, alive, 672 days 46254.7
TCGA-FV-A3R3-01A 38 years, female, white, stage:Stage I, dead, 366 days 46063.5
TCGA-DD-AADB-01A 51 years, male, asian, stage:Stage I, alive, 1242 days 45832.3
TCGA-RC-A6M4-01A 74 years, female, white, stage:Stage IIIA, alive, 22 days 45678.3
TCGA-3K-AAZ8-01A 65 years, male, black or african american, stage:Stage IIIB, alive, 396 days 45593.8
TCGA-HP-A5MZ-01A 78 years, male, stage:Stage I, dead, 91 days 45344.1
TCGA-G3-A3CJ-01A 52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days 45124.3
TCGA-WQ-AB4B-01A 62 years, male, white, stage:Stage II, alive, 395 days 45013.2
TCGA-G3-AAV1-01A 51 years, male, asian, stage:Stage IIIC, dead, 359 days 44857.7
TCGA-DD-AAW2-01A 69 years, male, asian, stage:Stage I, alive, 1855 days 44732.0
TCGA-DD-AAE3-01A 50 years, male, asian, stage:Stage I, alive, 566 days 44728.8
TCGA-BC-A216-01A 62 years, female, white, stage:Stage IIIA, alive, 1351 days 44688.7
TCGA-ED-A66X-01A 35 years, male, asian, stage:Stage IIIA, alive, 406 days 44334.2
TCGA-DD-AACB-01A 74 years, female, asian, stage:Stage I, alive, 2324 days 44033.9
TCGA-CC-A7IH-01A 58 years, male, asian, stage:Stage IIIA, alive, 365 days 43675.1
TCGA-DD-AACT-01A 69 years, female, asian, stage:Stage I, alive, 1562 days 43582.7
TCGA-DD-AACY-01A 61 years, male, asian, stage:Stage I, alive, 1450 days 42990.0
TCGA-G3-AAV3-01A 58 years, female, white, stage:Stage II, alive, 412 days 42418.0
TCGA-DD-AACK-01A 70 years, male, asian, stage:Stage I, alive, 9 days 42319.0
TCGA-DD-AACG-01A 52 years, male, asian, stage:Stage II, dead, 469 days 42271.8
TCGA-UB-A7ME-01A 51 years, male, asian, stage:Stage I, alive, 486 days 42054.6
TCGA-ZS-A9CD-01A 73 years, male, white, stage:Stage II, dead, 1386 days 41881.6
TCGA-DD-A1EB-01A 72 years, female, stage:Stage I, alive, 2017 days 40944.5
TCGA-UB-A7MB-01A 24 years, male, white, stage:Stage II, alive, 601 days 40840.8
TCGA-DD-AADL-01A 58 years, male, asian, stage:Stage I, alive, 636 days 40622.4
TCGA-G3-A3CI-01A 71 years, male, white, stage:Stage I, alive, 180 days 40458.8
TCGA-DD-AAVS-01A 56 years, male, asian, stage:Stage I, alive, 1823 days 40203.8
TCGA-DD-AAVP-01A 48 years, male, asian, stage:Stage I, alive, 2752 days 39879.9
TCGA-DD-A3A2-01A 76 years, female, white, stage:Stage I, dead, 2131 days 39623.5
TCGA-FV-A4ZP-01A 78 years, male, white, stage:Stage IIIA, dead, 2486 days 39454.3
TCGA-DD-A4NQ-01A 60 years, male, white, stage:Stage II, dead, 373 days 39298.8
TCGA-FV-A23B-01A 70 years, female, white, stage:Stage II, dead, 1852 days 39268.2
TCGA-DD-AAD8-01A 73 years, female, asian, stage:Stage I, alive, 1219 days 39191.6
TCGA-2Y-A9H8-01A 85 years, female, white, stage:'--, dead, 633 days 38907.0
TCGA-CC-A7IK-01A 59 years, male, asian, stage:Stage IIIA, dead, 262 days 38594.4
TCGA-G3-A7M5-01A 76 years, male, asian, stage:Stage I, alive, 447 days 38431.4
TCGA-DD-AACF-01A 68 years, male, asian, stage:Stage I, dead, 365 days 38395.3
TCGA-BD-A2L6-01A 69 years, male, white, stage:'--, alive, 1363 days 38319.1
TCGA-RC-A7SH-01A 42 years, male, asian, stage:Stage II, alive, 468 days 38310.5
TCGA-G3-A25Z-01A 58 years, male, asian, stage:Stage I, alive, 655 days 38096.2
TCGA-DD-AACS-01A 39 years, male, asian, stage:Stage I, alive, 1804 days 37935.3
TCGA-EP-A12J-01A 62 years, male, black or african american, stage:Stage I, alive, 570 days 37886.4
TCGA-DD-A4NR-01A 85 years, female, white, stage:Stage I, dead, 9 days 37565.9
TCGA-DD-AACX-01A 66 years, male, asian, stage:Stage II, alive, 170 days 37481.3
TCGA-LG-A6GG-01A 79 years, female, white, stage:Stage II, alive, 387 days 37238.8
TCGA-DD-AAD3-01A 43 years, male, asian, stage:Stage I, alive, 1295 days 37011.5
TCGA-DD-AAD2-01A 66 years, male, asian, stage:Stage I, alive, 658 days 36802.5
TCGA-XR-A8TE-01A 16 years, male, white, stage:Stage IIIA, alive, 925 days 36663.1
TCGA-2Y-A9H5-01A 59 years, female, white, stage:Stage I, dead, 555 days 36202.3
TCGA-CC-A8HT-01A 74 years, male, asian, stage:Stage IIIA, dead, 140 days 35768.2
TCGA-DD-AADM-01A 58 years, male, asian, stage:Stage II, dead, 12 days 35731.9
TCGA-CC-A7IF-01A 59 years, male, asian, stage:Stage IIIA, dead, 649 days 35351.4
TCGA-EP-A26S-01A 70 years, male, white, stage:Stage I, alive, 608 days 35202.4
TCGA-DD-A4NF-01A 72 years, male, white, stage:Stage I, alive, 942 days 34831.7
TCGA-DD-AADC-01A 53 years, male, asian, stage:Stage I, dead, 425 days 34687.5
TCGA-NI-A8LF-01A 74 years, male, white, stage:Stage I, alive, 799 days 34682.4
TCGA-BW-A5NO-01A 50 years, male, black or african american, stage:Stage IIIA, alive, 20 days 34593.4
TCGA-ED-A4XI-01A 58 years, male, asian, stage:Stage II, alive, 819 days 34576.6
TCGA-BC-A10Z-01A 62 years, female, white, stage:Stage I, dead, 34 days 34558.9
TCGA-FV-A3R2-01A 75 years, male, white, stage:Stage I, dead, 194 days 33968.8
TCGA-BC-A69I-01A 69 years, male, white, stage:Stage I, alive, 387 days 33907.8
TCGA-DD-A11B-01A 73 years, male, white, stage:Stage I, dead, 14 days 33814.7
TCGA-2Y-A9GW-01A 64 years, male, white, stage:Stage I, dead, 1271 days 33810.9
TCGA-DD-AAE4-01A 49 years, female, asian, stage:Stage I, alive, 608 days 33755.1
TCGA-KR-A7K8-01A 57 years, male, stage:Stage I, alive, 906 days 33713.2
TCGA-HP-A5N0-01A 90 years, female, stage:'--, dead, 752 days 33518.9
TCGA-FV-A3I1-01A 81 years, female, white, stage:Stage II, dead, 247 days 33328.6
TCGA-GJ-A9DB-01A 68 years, male, white, stage:Stage I, dead, 67 days 33258.7
TCGA-DD-A4NO-01A 65 years, male, white, stage:Stage I, alive, 2245 days 33220.1
TCGA-RC-A6M6-01A 75 years, male, white, stage:Stage II, alive, 9 days 33025.0
TCGA-DD-AAVQ-01A 38 years, male, asian, stage:Stage I, alive, 2728 days 32692.0
TCGA-K7-A5RF-01A 64 years, male, white, stage:Stage I, alive, 631 days 32608.6
TCGA-ZP-A9D1-01A 56 years, female, white, stage:'--, alive, 21 days 31961.8
TCGA-DD-A118-01A 77 years, female, white, stage:Stage II, alive, 3437 days 31867.8
TCGA-5C-A9VG-01A 58 years, male, white, stage:Stage II, alive, 328 days 31429.0
TCGA-BC-A10T-01A 76 years, male, white, stage:'--, dead, 837 days 31425.2
TCGA-MR-A520-01A 58 years, male, white, stage:Stage I, alive, 229 days 31422.8
TCGA-BD-A3EP-01A 75 years, female, black or african american, stage:Stage I, alive, 409 days 31033.1
TCGA-G3-A3CK-01A 61 years, male, asian, stage:Stage I, alive, 585 days 30912.0
TCGA-CC-A8HV-01A 51 years, female, asian, stage:Stage II, dead, 279 days 30887.6
TCGA-ED-A7PZ-01A 61 years, male, asian, stage:Stage II, alive, 6 days 30474.3
TCGA-DD-AAEK-01A 51 years, male, asian, stage:Stage II, alive, 1067 days 30411.2
TCGA-DD-A11D-01A 57 years, female, white, stage:Stage I, dead, 1560 days 30407.3
TCGA-DD-A4NK-01A 80 years, female, white, stage:Stage IIIA, dead, 1210 days 30356.5
TCGA-BC-A10S-01A 81 years, male, white, stage:'--, dead, 1423 days 29851.5
TCGA-K7-A5RG-01A 66 years, male, black or african american, stage:Stage I, alive, 519 days 29831.6
TCGA-XR-A8TD-01A 49 years, female, white, stage:Stage IIIB, alive, 1030 days 29433.8
TCGA-DD-A39W-01A 29 years, female, white, stage:Stage III, dead, 827 days 29355.3
TCGA-DD-AAW3-01A 69 years, male, asian, stage:Stage I, alive, 1633 days 29169.4
TCGA-DD-A1EF-01A 57 years, female, white, stage:Stage I, dead, 394 days 28701.0
TCGA-DD-AACU-01A 59 years, male, asian, stage:Stage I, alive, 1567 days 28663.0
TCGA-ZP-A9CV-01A 59 years, male, white, stage:'--, dead, 1088 days 28603.3
TCGA-G3-A5SK-01A 58 years, male, white, stage:Stage I, alive, 744 days 28317.0
TCGA-DD-AACA-01A 65 years, male, asian, stage:Stage I, alive, 2301 days 28121.4
TCGA-CC-A9FW-01A 68 years, male, asian, stage:Stage IIIA, alive, 248 days 28069.9
TCGA-FV-A4ZQ-01A 52 years, male, white, stage:Stage I, alive, 12 days 27982.2
TCGA-DD-AAEI-01A 72 years, male, asian, stage:Stage I, alive, 1531 days 27880.9
TCGA-4R-AA8I-01A 66 years, male, white, stage:Stage II, dead, 262 days 27842.4
TCGA-BD-A3ER-01A 62 years, male, white, stage:Stage II, alive, 1115 days 27459.4
TCGA-ZP-A9CY-01A 66 years, female, white, stage:'--, alive, 782 days 27455.1
TCGA-G3-A25Y-01A 52 years, female, asian, stage:Stage I, dead, 452 days 27312.8
TCGA-DD-AACD-01A 48 years, male, asian, stage:Stage I, dead, 381 days 27194.8
TCGA-DD-AAEH-01A 73 years, male, asian, stage:Stage I, alive, 784 days 26920.6
TCGA-MI-A75E-01A 61 years, male, white, stage:Stage IIIC, alive, 507 days 26823.0
TCGA-CC-A3MB-01A 36 years, male, asian, stage:Stage IIIA, dead, 315 days 26250.7
TCGA-UB-A7MF-01A 56 years, male, white, stage:Stage IIIA, dead, 214 days 26093.9
TCGA-DD-AACV-01A 53 years, male, asian, stage:Stage I, alive, 1531 days 25630.5
TCGA-RC-A7SK-01A 59 years, male, asian, stage:Stage I, alive, 472 days 25410.3
TCGA-WX-AA46-01A 61 years, male, white, stage:Stage II, alive, 756 days 25167.8
TCGA-LG-A9QC-01A 48 years, male, white, stage:Stage I, alive, 425 days 24962.5
TCGA-DD-AACN-01A 32 years, male, asian, stage:Stage I, alive, 1302 days 24812.1
TCGA-ED-A7XO-01A 29 years, male, asian, stage:Stage IIIA, alive, 427 days 24336.7
TCGA-G3-A3CH-01A 53 years, male, asian, stage:Stage IIIA, alive, 780 days 24281.5
TCGA-DD-AAD1-01A 51 years, female, asian, stage:Stage I, alive, 564 days 24265.0
TCGA-EP-A3RK-01A 73 years, male, white, stage:Stage IIIA, alive, 363 days 24069.2
TCGA-DD-A1EH-01A 23 years, male, white, stage:Stage III, alive, 1495 days 23802.3
TCGA-5R-AA1C-01A 57 years, male, white, stage:Stage II, alive, 520 days 23535.9
TCGA-UB-AA0U-01A 60 years, male, white, stage:Stage II, alive, 327 days 23476.9
TCGA-QA-A7B7-01A 48 years, male, black or african american, stage:Stage II, alive, 94 days 23378.0
TCGA-DD-AAEG-01A 59 years, female, asian, stage:Stage I, alive, 719 days 22776.6
TCGA-DD-A73A-01A 71 years, male, white, stage:Stage I, alive, 728 days 22549.8
TCGA-BC-A3KG-01A 68 years, female, white, stage:Stage II, alive, 680 days 22276.3
TCGA-DD-A1EL-01A 23 years, male, black or african american, stage:Stage II, dead, 415 days 22116.5
TCGA-DD-A114-01A 42 years, male, black or african american, stage:Stage II, dead, 1149 days 22108.6
TCGA-ZP-A9D4-01A 64 years, female, white, stage:'--, alive, 395 days 21890.4
TCGA-DD-AAE7-01A 72 years, male, asian, stage:Stage I, alive, 644 days 21811.8
TCGA-DD-A3A5-01A 66 years, female, white, stage:Stage III, dead, 3125 days 21737.3
TCGA-G3-AAV7-01A 38 years, male, asian, stage:Stage II, alive, 361 days 21713.3
TCGA-G3-A25U-01A 63 years, female, asian, stage:Stage I, alive, 1636 days 21615.4
TCGA-DD-A73F-01A 77 years, female, white, stage:Stage I, alive, 1085 days 21451.9
TCGA-DD-AAE2-01A 51 years, male, asian, stage:Stage I, alive, 638 days 21150.9
TCGA-DD-AAVX-01A 38 years, male, asian, stage:Stage II, alive, 1718 days 21081.6
TCGA-UB-AA0V-01A 69 years, female, white, stage:Stage I, alive, 314 days 21024.6
TCGA-DD-AADV-01A 50 years, male, asian, stage:Stage I, alive, 574 days 20863.7
TCGA-DD-A4NP-01A 32 years, male, white, stage:Stage I, alive, 3308 days 20713.5
TCGA-ZP-A9D2-01A 51 years, male, white, stage:'--, dead, 765 days 20623.7
TCGA-CC-A8HS-01A 18 years, male, asian, stage:Stage IIIC, dead, 300 days 20326.0
TCGA-DD-A113-01A 55 years, female, white, stage:Stage II, alive, 2425 days 20212.8
TCGA-BC-A10X-01A 52 years, female, white, stage:Stage IIIA, dead, 770 days 19706.3
TCGA-DD-A1EA-01A 68 years, male, asian, stage:Stage II, alive, 2415 days 19426.0
TCGA-ED-A459-01A 47 years, male, asian, stage:Stage II, alive, 910 days 19343.7
TCGA-G3-A7M7-01A 65 years, male, white, stage:Stage I, alive, 361 days 19043.9
TCGA-5R-AAAM-01A 65 years, female, white, stage:Stage II, dead, 46 days 18907.4
TCGA-G3-A25V-01A 68 years, male, white, stage:Stage I, alive, 860 days 18843.9
TCGA-DD-A4NS-01A 61 years, female, white, stage:Stage I, dead, 2456 days 18545.6
TCGA-DD-A4NJ-01A 54 years, female, white, stage:Stage II, alive, 928 days 18504.0
TCGA-BC-A217-01A 75 years, female, white, stage:Stage II, dead, 1397 days 18457.8
TCGA-DD-A4ND-01A 56 years, female, white, stage:Stage I, alive, 2746 days 18411.9
TCGA-BC-A110-01A 51 years, female, black or african american, stage:'--, dead, 2116 days 18366.1
TCGA-5C-AAPD-01A 61 years, male, asian, stage:Stage II, alive, 20 days 18253.9
TCGA-DD-A4NG-01A 77 years, male, white, stage:Stage IIIA, dead, 802 days 18159.2
TCGA-DD-A11C-01A 69 years, male, white, stage:Stage I, alive, 662 days 17894.4
TCGA-DD-AADW-01A 48 years, male, asian, stage:Stage I, alive, 587 days 17565.0
TCGA-CC-A5UE-01A 48 years, male, asian, stage:Stage IIIB, dead, 272 days 17062.7
TCGA-DD-AAVV-01A 56 years, male, asian, stage:Stage II, alive, 2455 days 16867.4
TCGA-ED-A66Y-01A 51 years, female, asian, stage:Stage IIIA, dead, 296 days 16529.6
TCGA-DD-A73C-01A 65 years, female, white, stage:Stage IIIA, alive, 701 days 16427.3
TCGA-2Y-A9GS-01A 58 years, male, white, stage:'--, dead, 724 days 16120.9
TCGA-DD-A4NV-01A 61 years, male, white, stage:Stage IIIA, alive, 2398 days 15734.6
TCGA-UB-A7MC-01A 59 years, male, white, stage:Stage IIIA, alive, 500 days 15153.8
TCGA-UB-A7MA-01A 62 years, female, white, stage:Stage II, alive, 848 days 14760.4
TCGA-DD-A1EE-01A 73 years, male, white, stage:Stage IIIA, dead, 349 days 14759.1
TCGA-DD-AACI-01A 69 years, male, asian, stage:Stage II, alive, 1618 days 14740.7
TCGA-XR-A8TG-01A 58 years, male, white, stage:Stage I, alive, 898 days 14626.1
TCGA-DD-A4NE-01A 75 years, female, white, stage:Stage IIIA, dead, 660 days 14351.4
TCGA-DD-AADQ-01A 59 years, male, asian, stage:Stage II, alive, 436 days 13871.2
TCGA-BC-A10W-01A 50 years, male, asian, stage:'--, dead, 91 days 13817.9
TCGA-DD-A4NI-01A 67 years, male, white, stage:Stage II, alive, 816 days 13511.0
TCGA-LG-A9QD-01A 68 years, male, white, stage:Stage IIIA, alive, 366 days 13319.6
TCGA-2Y-A9GX-01A 68 years, male, white, stage:Stage I, alive, 2442 days 13192.3
TCGA-ED-A5KG-01A 60 years, female, asian, stage:Stage II, alive, 854 days 13026.6
TCGA-CC-A3MC-01A 54 years, male, asian, stage:Stage IIIA, alive, 363 days 12958.2
TCGA-G3-A6UC-01A 65 years, male, white, stage:Stage IIIB, alive, 671 days 12954.7
TCGA-ED-A627-01A 74 years, male, white, stage:Stage I, alive, 423 days 12884.4
TCGA-2Y-A9H4-01A 68 years, male, black or african american, stage:Stage I, alive, 1452 days 12381.5
TCGA-DD-A4NL-01A 46 years, male, white, stage:Stage I, alive, 1711 days 12245.6
TCGA-CC-5261-01A 44 years, male, asian, stage:Stage II, dead, 97 days 12168.8
TCGA-G3-A7M9-01A 70 years, male, white, stage:Stage IIIB, dead, 56 days 11721.5
TCGA-2Y-A9GT-01A 51 years, male, white, stage:Stage I, dead, 1624 days 11459.3
TCGA-2Y-A9H9-01A 70 years, male, white, stage:Stage I, alive, 697 days 11395.2
TCGA-WJ-A86L-01A 68 years, female, white, stage:Stage I, alive, 345 days 10540.5
TCGA-BC-A10R-01A 66 years, female, white, stage:'--, dead, 308 days 10500.4
TCGA-2Y-A9GZ-01A 82 years, female, white, stage:Stage II, dead, 848 days 9891.6
TCGA-EP-A2KA-01A 52 years, female, white, stage:Stage IIIA, dead, 627 days 9852.1
TCGA-ED-A7PX-01A 48 years, female, asian, stage:Stage II, alive, 6 days 9827.5
TCGA-DD-A3A1-01A 65 years, male, stage:Stage IIIA, dead, 233 days 9244.4
TCGA-2Y-A9GV-01A 54 years, female, white, stage:Stage I, dead, 2532 days 8818.2
TCGA-G3-A7M8-01A 31 years, male, asian, stage:Stage I, alive, 430 days 8402.2
TCGA-DD-A1ED-01A 68 years, male, white, stage:Stage I, alive, 2301 days 8069.7
TCGA-G3-A7M6-01A 60 years, female, white, stage:Stage I, alive, 632 days 8015.5
TCGA-DD-A3A4-01A 37 years, male, white, stage:Stage IIIA, dead, 612 days 7877.6
TCGA-CC-5264-01A 71 years, male, asian, stage:Stage IIIA, dead, 102 days 6402.1
TCGA-DD-AAE0-01A 45 years, female, asian, stage:Stage IIIA, alive, 555 days 6096.1
TCGA-K7-AAU7-01A 61 years, male, white, stage:Stage II, alive, 359 days 5563.6
TCGA-G3-A25X-01A 73 years, male, asian, stage:Stage II, alive, 1779 days 5517.9
TCGA-BC-A10Y-01A 76 years, male, white, stage:'--, dead, 711 days 5362.8
TCGA-ZS-A9CF-01A 64 years, male, white, stage:Stage II, alive, 2412 days 5127.3
TCGA-DD-A73E-01A 66 years, male, white, stage:Stage I, alive, 44 days 4648.8
TCGA-G3-AAUZ-01A 48 years, male, stage:Stage I, alive, 480 days 4385.1
TCGA-UB-A7MD-01A 67 years, male, black or african american, stage:Stage I, dead, 52 days 4303.0
TCGA-5R-AA1D-01A 17 years, female, white, stage:Stage IIIA, alive, 449 days 4253.7
TCGA-DD-A115-01A 53 years, male, white, stage:Stage IIIA, dead, 2542 days 4026.6
TCGA-CC-5263-01A 35 years, male, asian, stage:Stage IIIA, dead, 129 days 3433.2
TCGA-BC-A8YO-01A 66 years, female, white, stage:Stage IIIC, alive, 562 days 3402.1
TCGA-DD-A4NB-01A 25 years, male, white, stage:Stage I, alive, 989 days 3255.8
TCGA-PD-A5DF-01A 58 years, female, white, stage:Stage IIIB, dead, 639 days 3234.9
TCGA-G3-A5SJ-01A 59 years, male, white, stage:Stage I, alive, 698 days 2759.9
TCGA-ED-A97K-01A 54 years, male, asian, stage:Stage IIIA, alive, 6 days 2666.6
TCGA-CC-A5UD-01A 45 years, male, asian, stage:Stage IIIA, dead, 304 days 2520.9
TCGA-G3-A25T-01A 45 years, female, white, stage:Stage IIIA, alive, 1553 days 2206.6
TCGA-CC-A3MA-01A 61 years, male, asian, stage:Stage IIIA, dead, 303 days 1829.4
TCGA-2Y-A9H2-01A 64 years, female, white, stage:Stage I, alive, 1731 days 1642.9
TCGA-RC-A6M5-01A 20 years, female, white, stage:Stage IVA, alive, 15 days 1311.3
TCGA-CC-A7II-01A 54 years, male, asian, stage:Stage IIIA, alive, 399 days 1135.9
TCGA-YA-A8S7-01A 68 years, male, white, stage:Stage IIIA, dead, 412 days 882.4
TCGA-DD-AACH-01A 69 years, male, asian, stage:Stage II, dead, 195 days 599.2
TCGA-DD-AA3A-01A 81 years, female, white, stage:Stage I, dead, 410 days 548.8
TCGA-MR-A8JO-01A 34 years, male, white, stage:Stage I, alive, 330 days 300.2
TCGA-WX-AA47-01A 33 years, female, white, stage:Stage IIIA, dead, 556 days 292.1
TCGA-DD-AAD5-01A 54 years, male, asian, stage:Stage I, alive, 1345 days 223.6
TCGA-CC-5260-01A 61 years, female, asian, stage:Stage IIIC, dead, 87 days 104.5
TCGA-CC-A7IJ-01A 56 years, male, asian, stage:Stage II, alive, 382 days 72.0
TCGA-ED-A82E-01A 60 years, female, asian, stage:Stage IIIA, alive, 408 days 57.5
TCGA-FV-A3I0-01A 76 years, female, white, stage:Stage II, alive, 848 days 49.6
TCGA-DD-A1EC-01A 20 years, female, white, stage:Stage I, alive, 602 days 40.8
TCGA-BC-A10Q-01A 72 years, female, white, stage:'--, dead, 1135 days 27.5
TCGA-DD-A3A6-01A 72 years, female, white, stage:Stage II, dead, 3258 days 23.0
TCGA-CC-A3M9-01A 45 years, male, asian, stage:Stage IIIA, dead, 300 days 16.2
TCGA-BC-A112-01A 80 years, male, white, stage:'--, dead, 153 days 14.6
TCGA-DD-A4NA-01A 67 years, female, white, stage:Stage IIIC, alive, 1008 days 10.0
TCGA-CC-A1HT-01A 50 years, male, asian, stage:Stage IIIA, dead, 101 days 7.7
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LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

APOA2 is not prognostic in Liver Hepatocellular Carcinoma (validation)


Stage:
Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

: 20039
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average pTPM 39982.8
Number of samples 231
Samples
Sample Description pTPM
DO45241 49 years, male, NA, stage:1, alive, 1080 days 152207.0
DO45187 32 years, female, NA, stage:1, alive, 1260 days 121287.0
DO50839 47 years, female, NA, stage:3, alive, 330 days 103604.0
DO45163 76 years, male, NA, stage:2, alive, 960 days 103242.0
DO45193 68 years, female, NA, stage:4, dead, 120 days 99001.6
DO50783 62 years, male, NA, stage:3, alive, 480 days 97479.4
DO23528 45 years, female, NA, stage:2, alive, 1020 days 96095.4
DO23539 77 years, male, NA, stage:1, alive, 1110 days 95526.5
DO45117 73 years, female, NA, stage:2, dead, 1110 days 92243.1
DO23548 78 years, female, NA, stage:1, alive, 840 days 89325.9
DO45129 61 years, male, NA, stage:3, alive, 1470 days 85533.1
DO45183 72 years, female, NA, stage:2, dead, 570 days 84804.3
DO23508 79 years, female, NA, stage:2, alive, 390 days 82982.5
DO23524 71 years, female, NA, stage:2, alive, 1050 days 81718.8
DO48672 81 years, male, NA, stage:2, alive, 450 days 80012.7
DO50814 83 years, male, NA, stage:3, alive, 420 days 79393.0
DO50803 62 years, female, NA, stage:1, alive, 540 days 79146.8
DO48701 78 years, male, NA, stage:2, alive, 780 days 78782.4
DO23512 60 years, male, NA, stage:1, alive, 1260 days 78425.1
DO50789 73 years, female, NA, stage:2, alive, 570 days 78236.5
DO48697 64 years, female, NA, stage:2, dead, 810 days 77568.0
DO23529 72 years, male, NA, stage:4, alive, 930 days 75735.1
DO48751 68 years, male, NA, stage:2, dead, 480 days 75300.3
DO50811 62 years, male, NA, stage:1, alive, 450 days 75115.7
DO48741 64 years, male, NA, stage:3, alive, 240 days 74377.8
DO50844 75 years, male, NA, stage:4, alive, 300 days 72510.1
DO45149 70 years, female, NA, stage:2, alive, 1260 days 72195.5
DO45153 77 years, female, NA, stage:2, alive, 1380 days 71662.9
DO23545 67 years, male, NA, stage:2, dead, 570 days 71167.5
DO45199 86 years, female, NA, stage:2, alive, 1350 days 70173.4
DO48681 57 years, male, NA, stage:2, alive, 900 days 70102.9
DO50850 74 years, male, NA, stage:3, alive, 720 days 69355.1
DO50776 75 years, male, NA, stage:1, alive, 690 days 68488.0
DO45119 74 years, male, NA, stage:3, dead, 510 days 68452.4
DO45223 67 years, male, NA, stage:4, alive, 1020 days 67544.3
DO48706 72 years, male, NA, stage:2, alive, 870 days 67440.0
DO50817 75 years, male, NA, stage:2, alive, 390 days 67397.5
DO45125 58 years, male, NA, stage:3, alive, 1680 days 66719.2
DO45191 61 years, female, NA, stage:2, alive, 1200 days 65744.7
DO50806 70 years, male, NA, stage:4, alive, 540 days 65107.1
DO45239 42 years, male, NA, stage:2, alive, 870 days 64530.4
DO50785 37 years, male, NA, stage:4, dead, 90 days 64031.5
DO23511 83 years, female, NA, stage:3, dead, 180 days 63665.7
DO48725 66 years, male, NA, stage:1, alive, 780 days 63231.9
DO45131 53 years, male, NA, stage:4, dead, 360 days 63217.4
DO23543 63 years, male, NA, stage:2, alive, 1020 days 63110.2
DO50820 77 years, female, NA, stage:3, alive, 510 days 63003.8
DO48695 77 years, male, NA, stage:2, alive, 720 days 62645.4
DO48721 58 years, female, NA, stage:1, alive, 900 days 62452.0
DO45173 63 years, male, NA, stage:3, alive, 1170 days 62035.7
DO45115 81 years, male, NA, stage:2, alive, 840 days 61380.6
DO45171 56 years, male, NA, stage:3, alive, 600 days 61349.4
DO23516 69 years, male, NA, stage:3, dead, 20 days 61048.8
DO45269 59 years, male, NA, stage:3, alive, 750 days 60073.2
DO45105 61 years, male, NA, stage:1, alive, 1680 days 59631.2
DO23534 60 years, male, NA, stage:2, alive, 840 days 58486.1
DO45201 49 years, male, NA, stage:1, alive, 900 days 58331.8
DO45121 61 years, male, NA, stage:3, alive, 1530 days 58198.2
DO45227 57 years, female, NA, stage:2, alive, 1020 days 57407.1
DO23535 67 years, male, NA, stage:1, alive, 960 days 57165.0
DO45265 73 years, male, NA, stage:3, alive, 1020 days 56944.6
DO50857 72 years, male, NA, stage:2, alive, 210 days 55110.4
DO50793 76 years, male, NA, stage:4, alive, 540 days 55097.0
DO48736 76 years, female, NA, stage:1, alive, 600 days 54853.6
DO45247 31 years, female, NA, stage:2, alive, 210 days 54809.4
DO50804 81 years, male, NA, stage:2, alive, 720 days 54441.4
DO45167 67 years, male, NA, stage:2, dead, 1440 days 53662.9
DO45179 78 years, female, NA, stage:2, alive, 600 days 53430.0
DO23536 56 years, male, NA, stage:2, alive, 930 days 52927.7
DO48700 78 years, female, NA, stage:2, alive, 810 days 52704.2
DO23514 64 years, male, NA, stage:2, alive, 1290 days 52649.6
DO23533 61 years, male, NA, stage:2, alive, 900 days 52165.7
DO50859 77 years, male, NA, stage:2, alive, 180 days 51875.7
DO48715 58 years, female, NA, stage:2, dead, 690 days 51818.6
DO48723 73 years, male, NA, stage:1, alive, 600 days 50587.4
DO45099 46 years, male, NA, stage:3, alive, 1590 days 50578.1
DO48757 68 years, female, NA, stage:3, alive, 480 days 50074.2
DO45165 75 years, male, NA, stage:2, alive, 690 days 48547.3
DO48733 72 years, male, NA, stage:2, alive, 600 days 47963.9
DO48743 69 years, female, NA, stage:2, alive, 570 days 47589.8
DO23510 80 years, female, NA, stage:2, alive, 870 days 47446.7
DO45093 71 years, male, NA, stage:2, dead, 720 days 47099.4
DO45107 63 years, female, NA, stage:2, alive, 1710 days 46554.5
DO45161 74 years, male, NA, stage:2, dead, 540 days 46464.6
DO45137 38 years, male, NA, stage:1, alive, 1320 days 46321.7
DO50816 63 years, male, NA, stage:2, alive, 390 days 46188.8
DO45096 69 years, male, NA, stage:2, dead, 1290 days 45651.4
DO45267 73 years, male, NA, stage:3, dead, 570 days 45608.2
DO45175 74 years, male, NA, stage:2, alive, 1140 days 45591.8
DO50845 72 years, male, NA, stage:3, alive, 210 days 45294.5
DO45095 66 years, male, NA, stage:2, alive, 1620 days 45223.2
DO45092 62 years, male, NA, stage:4, dead, 1200 days 44137.2
DO45103 47 years, male, NA, stage:3, alive, 450 days 44078.2
DO45203 71 years, female, NA, stage:2, alive, 1170 days 43930.0
DO45257 46 years, male, NA, stage:3, alive, 810 days 43752.7
DO48693 71 years, male, NA, stage:2, alive, 900 days 42881.6
DO23550 69 years, male, NA, stage:1, alive, 990 days 42837.9
DO45221 75 years, female, NA, stage:4, dead, 390 days 42169.4
DO50808 68 years, male, NA, stage:2, alive, 570 days 41933.7
DO45145 78 years, male, NA, stage:3, dead, 60 days 41656.2
DO48677 58 years, male, NA, stage:3, alive, 1140 days 41453.0
DO23521 63 years, male, NA, stage:3, alive, 1110 days 41415.2
DO45243 74 years, female, NA, stage:3, alive, 930 days 40909.8
DO45091 56 years, male, NA, stage:2, dead, 1320 days 40426.7
DO48760 70 years, female, NA, stage:2, alive, 690 days 39958.8
DO23549 74 years, male, NA, stage:3, alive, 990 days 39558.7
DO227801 77 years, female, NA, stage:1, alive, 660 days 39207.0
DO45101 63 years, male, NA, stage:2, alive, 1680 days 39140.9
DO45281 83 years, male, NA, stage:4, alive, 750 days 39061.3
DO48737 52 years, male, NA, stage:1, alive, 720 days 39011.7
DO45209 70 years, male, NA, stage:4, alive, 1350 days 38826.1
DO50832 73 years, male, NA, stage:3, alive, 90 days 38506.5
DO48712 50 years, male, NA, stage:2, alive, 810 days 38120.2
DO50787 63 years, male, NA, stage:3, alive, 480 days 37949.0
DO48746 76 years, male, NA, stage:3, alive, 570 days 37811.8
DO45123 78 years, female, NA, stage:2, dead, 570 days 37562.5
DO45143 69 years, male, NA, stage:3, alive, 1290 days 37362.3
DO48674 80 years, male, NA, stage:2, alive, 1260 days 37011.7
DO45113 58 years, male, NA, stage:3, alive, 1560 days 36920.0
DO45255 81 years, male, NA, stage:3, alive, 720 days 36468.8
DO50809 56 years, male, NA, stage:3, dead, 720 days 36175.7
DO50805 72 years, male, NA, stage:2, alive, 690 days 36164.6
DO23542 66 years, male, NA, stage:3, alive, 960 days 35966.2
DO48759 73 years, male, NA, stage:3, alive, 720 days 35893.8
DO50822 66 years, male, NA, stage:2, alive, 510 days 35710.7
DO45237 58 years, male, NA, stage:2, alive, 900 days 35418.8
DO45127 73 years, male, NA, stage:3, dead, 420 days 35360.4
DO45141 73 years, male, NA, stage:2, alive, 1320 days 35101.2
DO50791 79 years, female, NA, stage:1, dead, 480 days 34120.0
DO227643 79 years, male, NA, stage:2, alive, 1260 days 33884.4
DO23532 71 years, female, NA, stage:1, alive, 960 days 33677.7
DO45213 58 years, male, NA, stage:1, alive, 1200 days 33519.0
DO23546 63 years, male, NA, stage:2, alive, 1050 days 33352.8
DO45261 74 years, male, NA, stage:3, alive, 990 days 33083.2
DO45229 74 years, male, NA, stage:1, alive, 990 days 32881.4
DO45177 81 years, female, NA, stage:3, alive, 1260 days 32761.9
DO45181 84 years, female, NA, stage:2, alive, 1200 days 31446.3
DO23517 62 years, male, NA, stage:2, alive, 1200 days 31369.7
DO48720 62 years, female, NA, stage:2, alive, 570 days 30899.5
DO50802 49 years, male, NA, stage:2, alive, 930 days 30723.3
DO50813 56 years, male, NA, stage:2, alive, 420 days 30326.1
DO45097 69 years, male, NA, stage:3, alive, 1620 days 30237.1
DO45215 65 years, male, NA, stage:2, alive, 1170 days 30212.5
DO48730 73 years, female, NA, stage:2, alive, 630 days 30130.3
DO50778 60 years, male, NA, stage:4, alive, 630 days 29676.7
DO45197 51 years, male, NA, stage:2, alive, 1170 days 29481.3
DO45225 69 years, male, NA, stage:1, alive, 1050 days 29424.0
DO48747 62 years, male, NA, stage:3, alive, 540 days 29345.7
DO23527 72 years, male, NA, stage:1, alive, 1050 days 29216.7
DO48679 72 years, male, NA, stage:2, alive, 1200 days 28799.4
DO23544 67 years, male, NA, stage:2, alive, 960 days 28792.3
DO23531 78 years, female, NA, stage:3, alive, 900 days 28226.6
DO48704 68 years, female, NA, stage:3, alive, 750 days 28118.8
DO48727 81 years, female, NA, stage:2, dead, 390 days 27839.8
DO45207 68 years, male, NA, stage:1, alive, 1050 days 27376.1
DO45109 63 years, male, NA, stage:2, alive, 1590 days 27134.7
DO45133 64 years, male, NA, stage:3, dead, 660 days 27118.7
DO45135 77 years, male, NA, stage:1, alive, 1410 days 26974.8
DO23513 76 years, male, NA, stage:3, alive, 1200 days 26942.9
DO50818 65 years, male, NA, stage:2, alive, 510 days 26748.7
DO23552 80 years, female, NA, stage:1, alive, 810 days 26329.6
DO23538 67 years, male, NA, stage:2, alive, 450 days 26053.5
DO48761 55 years, male, NA, stage:2, alive, 870 days 26050.0
DO48719 80 years, male, NA, stage:2, alive, 690 days 25650.5
DO48728 74 years, female, NA, stage:2, alive, 150 days 25633.4
DO45094 76 years, male, NA, stage:3, alive, 1650 days 25185.1
DO50799 66 years, female, NA, stage:2, alive, 540 days 24903.8
DO23525 71 years, male, NA, stage:4, alive, 1050 days 23918.4
DO45273 62 years, male, NA, stage:2, alive, 480 days 23886.1
DO50825 70 years, male, NA, stage:2, alive, 390 days 22739.1
DO45157 62 years, male, NA, stage:2, alive, 1980 days 21098.0
DO23515 71 years, male, NA, stage:2, alive, 1230 days 20350.9
DO45195 62 years, male, NA, stage:1, alive, 390 days 20118.8
DO45263 67 years, male, NA, stage:3, dead, 270 days 19959.3
DO45217 69 years, female, NA, stage:3, dead, 270 days 19694.6
DO45111 74 years, male, NA, stage:2, alive, 1590 days 19512.4
DO50774 68 years, female, NA, stage:2, alive, 720 days 19023.8
DO45159 65 years, male, NA, stage:3, alive, 1470 days 18142.9
DO48716 71 years, male, NA, stage:2, alive, 720 days 17047.0
DO50819 72 years, female, NA, stage:2, alive, 510 days 16846.6
DO23551 73 years, male, NA, stage:3, dead, 150 days 16676.3
DO48682 72 years, female, NA, stage:3, dead, 120 days 16551.2
DO45219 78 years, male, NA, stage:2, alive, 1080 days 16524.1
DO23518 67 years, male, NA, stage:2, alive, 1320 days 16221.9
DO50840 49 years, male, NA, stage:2, alive, 330 days 15744.6
DO23537 79 years, male, NA, stage:2, dead, 900 days 13713.9
DO45275 65 years, male, NA, stage:3, dead, 10 days 13673.7
DO45185 89 years, male, NA, stage:2, alive, 600 days 13376.2
DO45231 84 years, male, NA, stage:2, alive, 930 days 13159.3
DO45155 69 years, male, NA, stage:2, alive, 2160 days 12920.8
DO23547 74 years, male, NA, stage:1, alive, 1020 days 12658.6
DO23540 73 years, male, NA, stage:1, alive, 750 days 12400.4
DO48742 76 years, male, NA, stage:2, alive, 600 days 12346.0
DO50815 62 years, male, NA, stage:3, alive, 150 days 12242.2
DO23541 65 years, male, NA, stage:2, alive, 930 days 11817.1
DO45233 83 years, male, NA, stage:3, alive, 900 days 11023.4
DO45235 68 years, female, NA, stage:1, alive, 900 days 10851.7
DO45259 65 years, male, NA, stage:3, alive, 330 days 9735.4
DO23526 66 years, male, NA, stage:3, alive, 1050 days 9422.6
DO50807 67 years, male, NA, stage:1, alive, 540 days 8204.6
DO50855 47 years, male, NA, stage:2, alive, 570 days 7276.8
DO45253 50 years, male, NA, stage:2, alive, 870 days 6936.8
DO23530 53 years, male, NA, stage:4, dead, 180 days 5651.9
DO45205 67 years, female, NA, stage:2, dead, 90 days 5520.3
DO45189 85 years, female, NA, stage:2, alive, 1200 days 5431.9
DO45139 63 years, male, NA, stage:3, alive, 1320 days 5258.9
DO23509 60 years, male, NA, stage:3, dead, 780 days 5089.5
DO50798 77 years, male, NA, stage:3, dead, 30 days 4843.0
DO50800 74 years, male, NA, stage:2, alive, 510 days 4430.5
DO45169 74 years, male, NA, stage:3, alive, 1350 days 3008.1
DO45251 57 years, female, NA, stage:2, alive, 900 days 2892.0
DO45249 57 years, male, NA, stage:1, alive, 630 days 2645.7
DO48732 73 years, male, NA, stage:3, alive, 630 days 1926.3
DO50829 78 years, male, NA, stage:3, alive, 570 days 1752.5
DO48717 54 years, male, NA, stage:4, dead, 180 days 1624.8
DO45301 56 years, male, NA, stage:2, dead, 1440 days 1132.7
DO45287 74 years, male, NA, stage:1, alive, 390 days 1127.8
DO23519 65 years, male, NA, stage:3, alive, 630 days 1018.7
DO45289 78 years, female, NA, stage:3, alive, 360 days 767.2
DO45305 66 years, male, NA, stage:4, alive, 300 days 456.7
DO45283 60 years, male, NA, stage:3, alive, 510 days 275.4
DO45303 62 years, female, NA, stage:3, alive, 990 days 109.2
DO45277 64 years, male, NA, stage:3, alive, 600 days 65.6
DO45279 67 years, male, NA, stage:3, alive, 1290 days 55.7
DO45245 75 years, female, NA, stage:2, dead, 240 days 51.3
DO23523 52 years, male, NA, stage:3, alive, 1080 days 40.4
DO45285 59 years, male, NA, stage:3, alive, 480 days 21.7
DO45297 61 years, female, NA, stage:4, dead, 1260 days 21.4
DO45299 70 years, female, NA, stage:1, alive, 1440 days 8.3
DO45211 76 years, male, NA, stage:3, alive, 240 days 6.7
DO45307 54 years, female, NA, stage:4, dead, 240 days 6.0
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LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples 330
Samples
Sample ID Sample type nRPX
877 Tumor 1.9
343 Tumor 1.4
135 Tumor 1.0
815 Tumor 1.0
517 Tumor 1.0
745 Tumor 0.9
671 Tumor 0.9
863 Tumor 0.9
471 Tumor 0.9
1027 Tumor 0.8
713 Tumor 0.8
817 Tumor 0.7
983 Tumor 0.7
147 Tumor 0.7
192 Normal 0.7
665 Tumor 0.7
425 Tumor 0.6
567 Tumor 0.6
125 Tumor 0.6
391 Tumor 0.5
131 Tumor 0.5
224 Normal 0.5
313 Tumor 0.5
777 Tumor 0.4
697 Tumor 0.4
851 Tumor 0.4
363 Tumor 0.4
435 Tumor 0.4
975 Tumor 0.4
921 Tumor 0.4
367 Tumor 0.4
785 Tumor 0.4
641 Tumor 0.4
743 Tumor 0.4
535 Tumor 0.3
257 Tumor 0.3
365 Tumor 0.3
685 Tumor 0.3
431 Tumor 0.3
635 Tumor 0.3
227 Tumor 0.3
663 Tumor 0.2
393 Tumor 0.2
746 Normal 0.2
563 Tumor 0.2
283 Tumor 0.2
813 Tumor 0.2
411 Tumor 0.2
368 Normal 0.2
261 Tumor 0.2
455 Tumor 0.2
112 Tumor 0.2
737 Tumor 0.2
515 Tumor 0.2
1045 Tumor 0.2
1025 Tumor 0.2
881 Tumor 0.1
951 Tumor 0.1
615 Tumor 0.1
384 Normal 0.1
311 Tumor 0.1
868 Normal 0.1
618 Normal 0.1
187 Tumor 0.1
573 Tumor 0.1
617 Tumor 0.1
461 Tumor 0.1
223 Tumor 0.1
627 Tumor 0.1
647 Tumor 0.0
977 Tumor 0.0
715 Tumor 0.0
537 Tumor 0.0
778 Normal 0.0
883 Tumor 0.0
1022 Normal 0.0
1041 Tumor 0.0
741 Tumor 0.0
878 Normal 0.0
387 Tumor 0.0
686 Normal 0.0
228 Normal 0.0
1028 Normal 0.0
915 Tumor 0.0
375 Tumor 0.0
953 Tumor 0.0
553 Tumor 0.0
857 Tumor 0.0
491 Tumor 0.0
474 Normal 0.0
221 Tumor 0.0
444 Normal 0.0
744 Normal 0.0
823 Tumor -0.1
1043 Tumor -0.1
523 Tumor -0.1
858 Normal -0.1
232 Normal -0.1
527 Tumor -0.1
331 Tumor -0.1
488 Normal -0.1
145 Tumor -0.1
462 Normal -0.1
421 Tumor -0.1
672 Normal -0.1
642 Normal -0.1
328 Normal -0.1
416 Normal -0.1
341 Tumor -0.1
636 Normal -0.1
816 Normal -0.1
862 Normal -0.1
914 Normal -0.1
366 Normal -0.1
271 Tumor -0.1
724 Normal -0.1
1021 Tumor -0.1
396 Normal -0.1
297 Tumor -0.1
911 Tumor -0.1
142 Normal -0.1
728 Normal -0.1
884 Normal -0.1
277 Tumor -0.1
327 Tumor -0.1
661 Tumor -0.1
477 Tumor -0.2
312 Normal -0.2
126 Normal -0.2
824 Normal -0.2
864 Normal -0.2
564 Normal -0.2
738 Normal -0.2
538 Normal -0.2
472 Normal -0.2
447 Tumor -0.2
616 Normal -0.2
874 Normal -0.2
967 Tumor -0.2
882 Normal -0.2
466 Normal -0.2
966 Normal -0.2
695 Tumor -0.2
568 Normal -0.2
361 Tumor -0.2
487 Tumor -0.2
354 Normal -0.2
866 Normal -0.2
385 Tumor -0.2
648 Normal -0.2
388 Normal -0.2
344 Normal -0.2
982 Normal -0.2
916 Normal -0.2
964 Normal -0.2
1031 Tumor -0.2
722 Normal -0.2
285 Tumor -0.2
867 Tumor -0.2
534 Normal -0.2
146 Normal -0.2
494 Normal -0.2
424 Normal -0.2
516 Normal -0.2
938 Normal -0.2
1032 Normal -0.2
217 Tumor -0.2
186 Normal -0.2
364 Normal -0.3
957 Tumor -0.3
464 Normal -0.3
148 Normal -0.3
1042 Normal -0.3
132 Normal -0.3
231 Tumor -0.3
386 Normal -0.3
965 Tumor -0.3
557 Tumor -0.3
448 Normal -0.3
533 Tumor -0.3
258 Normal -0.3
124 Normal -0.3
873 Tumor -0.3
267 Tumor -0.3
362 Normal -0.3
536 Normal -0.3
924 Normal -0.3
481 Tumor -0.3
723 Tumor -0.3
342 Normal -0.3
958 Normal -0.3
721 Tumor -0.3
922 Normal -0.3
574 Normal -0.3
483 Tumor -0.3
262 Normal -0.3
351 Tumor -0.3
513 Tumor -0.3
185 Tumor -0.3
111 Normal -0.3
272 Normal -0.3
571 Tumor -0.3
546 Normal -0.3
727 Tumor -0.3
136 Normal -0.3
376 Normal -0.3
852 Normal -0.3
482 Normal -0.3
191 Tumor -0.3
818 Normal -0.3
356 Normal -0.3
956 Normal -0.3
456 Normal -0.3
696 Normal -0.3
861 Tumor -0.3
716 Normal -0.4
128 Normal -0.4
514 Normal -0.4
138 Normal -0.4
137 Tumor -0.4
976 Normal -0.4
666 Normal -0.4
196 Normal -0.4
171 Tumor -0.4
213 Tumor -0.4
268 Normal -0.4
172 Normal -0.4
572 Normal -0.4
478 Normal -0.4
714 Normal -0.4
1016 Normal -0.4
786 Normal -0.4
923 Tumor -0.4
428 Normal -0.4
912 Normal -0.4
756 Normal -0.4
445 Tumor -0.4
433 Tumor -0.4
286 Normal -0.4
314 Normal -0.4
952 Normal -0.4
628 Normal -0.4
452 Normal -0.4
984 Normal -0.4
463 Tumor -0.4
383 Tumor -0.4
123 Tumor -0.4
113 Tumor -0.4
1046 Normal -0.4
141 Tumor -0.4
278 Normal -0.4
498 Normal -0.4
742 Normal -0.4
755 Tumor -0.4
355 Tumor -0.5
558 Normal -0.5
188 Normal -0.5
918 Normal -0.5
412 Normal -0.5
415 Tumor -0.5
545 Tumor -0.5
353 Tumor -0.5
434 Normal -0.5
917 Tumor -0.5
968 Normal -0.5
392 Normal -0.5
1026 Normal -0.5
426 Normal -0.5
698 Normal -0.5
413 Tumor -0.5
465 Tumor -0.5
114 Normal -0.5
432 Normal -0.5
222 Normal -0.5
492 Normal -0.5
298 Normal -0.5
664 Normal -0.5
963 Tumor -0.5
1015 Tumor -0.5
127 Tumor -0.5
394 Normal -0.5
195 Tumor -0.5
913 Tumor -0.5
212 Normal -0.5
518 Normal -0.6
525 Tumor -0.6
662 Normal -0.6
468 Normal -0.6
395 Tumor -0.6
814 Normal -0.6
1014 Normal -0.6
484 Normal -0.6
954 Normal -0.6
414 Normal -0.6
214 Normal -0.6
451 Tumor -0.6
944 Normal -0.6
284 Normal -0.6
926 Normal -0.6
526 Normal -0.6
981 Tumor -0.6
162 Normal -0.6
955 Tumor -0.6
493 Tumor -0.6
528 Normal -0.6
446 Normal -0.6
978 Normal -0.7
357 Tumor -0.7
352 Normal -0.7
865 Tumor -0.7
436 Normal -0.7
1044 Normal -0.7
332 Normal -0.7
423 Tumor -0.7
358 Normal -0.7
473 Tumor -0.7
467 Tumor -0.7
422 Normal -0.7
554 Normal -0.8
524 Normal -0.8
443 Tumor -0.8
218 Normal -0.8
925 Tumor -0.8
161 Tumor -0.9
943 Tumor -0.9
1013 Tumor -1.0
937 Tumor -1.0
497 Tumor -1.0
427 Tumor -1.1
211 Tumor -1.2
Show allShow less
LIVER CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

 

Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.


Antibody HPA072575

Antibody CAB025885
 Staining
  High
  Medium
  Low
  Not detected
 Intensity
  Strong
  Moderate
  Weak
  Negative
 Quantity
  >75%
  75%-25%
  <25%
  None
 Location
  Nuclear
  Cytoplasmic/membranous
  Cytoplasmic/membranous,nuclear
  None
Carcinoma, Hepatocellular, NOS
Cholangiocarcinoma

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