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SYNJ1
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • CELL LINE

  • STRUCT & INT

  • SYNJ1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SYNJ1
Synonyms INPP5G, PARK20
Gene descriptioni

Full gene name according to HGNC.

Synaptojanin 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Enzymes
Human disease related genes
Metabolic proteins
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 21
Cytoband q22.11
Chromosome location (bp) 32628759 - 32728040
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

12
Ensembl ENSG00000159082 (version 109)
Entrez gene 8867
HGNC HGNC:11503
UniProt O43426 (UniProt - Evidence at protein level)
neXtProt NX_O43426
GeneCards SYNJ1
Antibodypedia SYNJ1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Phosphatase that acts on various phosphoinositides, including phosphatidylinositol 4-phosphate, phosphatidylinositol (4,5)- bisphosphate and phosphatidylinositol (3,4,5)-trisphosphate 1, 2. Has a role in clathrin-mediated endocytosis (By similarity). Hydrolyzes PIP2 bound to actin regulatory proteins resulting in the rearrangement of actin filaments downstream of tyrosine kinase and ASH/GRB2 (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Hydrolase, RNA-binding
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Endocytosis, Lipid metabolism
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a phosphoinositide phosphatase that regulates levels of membrane phosphatidylinositol-4,5-bisphosphate. As such, expression of this enzyme may affect synaptic transmission and membrane trafficking. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SYNJ1-201
ENSP00000349903
ENST00000357345
O43426
[Direct mapping] Synaptojanin-1
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0003824 [catalytic activity]
GO:0004438 [phosphatidylinositol-3-phosphatase activity]
GO:0004439 [phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005874 [microtubule]
GO:0006629 [lipid metabolic process]
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0006836 [neurotransmitter transport]
GO:0006897 [endocytosis]
GO:0007420 [brain development]
GO:0007612 [learning]
GO:0012506 [vesicle membrane]
GO:0016082 [synaptic vesicle priming]
GO:0016191 [synaptic vesicle uncoating]
GO:0016787 [hydrolase activity]
GO:0016791 [phosphatase activity]
GO:0017124 [SH3 domain binding]
GO:0030117 [membrane coat]
GO:0030132 [clathrin coat of coated pit]
GO:0034595 [phosphatidylinositol phosphate 5-phosphatase activity]
GO:0034596 [phosphatidylinositol phosphate 4-phosphatase activity]
GO:0036092 [phosphatidylinositol-3-phosphate biosynthetic process]
GO:0043195 [terminal bouton]
GO:0043647 [inositol phosphate metabolic process]
GO:0043812 [phosphatidylinositol-4-phosphate phosphatase activity]
GO:0043813 [phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity]
GO:0046488 [phosphatidylinositol metabolic process]
GO:0046855 [inositol phosphate dephosphorylation]
GO:0046856 [phosphatidylinositol dephosphorylation]
GO:0048471 [perinuclear region of cytoplasm]
GO:0048488 [synaptic vesicle endocytosis]
GO:0048489 [synaptic vesicle transport]
GO:0052629 [phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity]
GO:0052658 [inositol-1,4,5-trisphosphate 5-phosphatase activity]
GO:0052866 [phosphatidylinositol phosphate phosphatase activity]
GO:0061024 [membrane organization]
GO:0097060 [synaptic membrane]
GO:0098793 [presynapse]
GO:1904980 [positive regulation of endosome organization]
Show all
1295 aa
143.3 kDa
No 0
SYNJ1-202
ENSP00000371931
ENST00000382491
J3KPK1
[Direct mapping] Phosphoinositide 5-phosphatase
Show all
Metabolic proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0003824 [catalytic activity]
GO:0004439 [phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity]
GO:0006629 [lipid metabolic process]
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0016787 [hydrolase activity]
GO:0016791 [phosphatase activity]
GO:0034595 [phosphatidylinositol phosphate 5-phosphatase activity]
GO:0046855 [inositol phosphate dephosphorylation]
GO:0046856 [phosphatidylinositol dephosphorylation]
GO:0048488 [synaptic vesicle endocytosis]
GO:0052866 [phosphatidylinositol phosphate phosphatase activity]
Show all
1264 aa
139.9 kDa
No 0
SYNJ1-203
ENSP00000371939
ENST00000382499
C9JFZ1
[Direct mapping] Phosphoinositide 5-phosphatase
Show all
Metabolic proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0003824 [catalytic activity]
GO:0004439 [phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity]
GO:0006629 [lipid metabolic process]
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0016787 [hydrolase activity]
GO:0016791 [phosphatase activity]
GO:0034595 [phosphatidylinositol phosphate 5-phosphatase activity]
GO:0046855 [inositol phosphate dephosphorylation]
GO:0046856 [phosphatidylinositol dephosphorylation]
GO:0048488 [synaptic vesicle endocytosis]
GO:0052866 [phosphatidylinositol phosphate phosphatase activity]
Show all
1350 aa
149.3 kDa
No 0
SYNJ1-204
ENSP00000387868
ENST00000418301
H7BZ56
[Direct mapping] Synaptojanin-1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
131 aa
13.3 kDa
No 0
SYNJ1-205
ENSP00000413649
ENST00000429236
C9JW66
[Direct mapping] Phosphoinositide 5-phosphatase
Show all
Metabolic proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0004439 [phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity]
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0016787 [hydrolase activity]
GO:0016791 [phosphatase activity]
GO:0034595 [phosphatidylinositol phosphate 5-phosphatase activity]
GO:0046855 [inositol phosphate dephosphorylation]
GO:0046856 [phosphatidylinositol dephosphorylation]
GO:0048488 [synaptic vesicle endocytosis]
Show all
695 aa
77.6 kDa
No 0
SYNJ1-206
ENSP00000409667
ENST00000433931
J3KQV8
[Direct mapping] Phosphoinositide 5-phosphatase
Show all
Metabolic proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0003824 [catalytic activity]
GO:0004439 [phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity]
GO:0006629 [lipid metabolic process]
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0016787 [hydrolase activity]
GO:0016791 [phosphatase activity]
GO:0034595 [phosphatidylinositol phosphate 5-phosphatase activity]
GO:0046855 [inositol phosphate dephosphorylation]
GO:0046856 [phosphatidylinositol dephosphorylation]
GO:0048488 [synaptic vesicle endocytosis]
GO:0052866 [phosphatidylinositol phosphate phosphatase activity]
Show all
1612 aa
177.5 kDa
No 0
SYNJ1-207
ENSP00000388869
ENST00000438952
H7BZC2
[Direct mapping] Synaptojanin-1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
187 aa
19.2 kDa
No 0
SYNJ1-208
ENSP00000412707
ENST00000456084
C9J1Z6
[Direct mapping] Synaptojanin-1
Show all
Metabolic proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0016791 [phosphatase activity]
GO:0034595 [phosphatidylinositol phosphate 5-phosphatase activity]
GO:0046856 [phosphatidylinositol dephosphorylation]
GO:0048488 [synaptic vesicle endocytosis]
Show all
178 aa
20.2 kDa
No 0
SYNJ1-211
ENSP00000487560
ENST00000630077
A0A0D9SGJ6
[Direct mapping] Phosphoinositide 5-phosphatase
Show all
Metabolic proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0003824 [catalytic activity]
GO:0004439 [phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity]
GO:0006629 [lipid metabolic process]
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0016787 [hydrolase activity]
GO:0016791 [phosphatase activity]
GO:0034595 [phosphatidylinositol phosphate 5-phosphatase activity]
GO:0046855 [inositol phosphate dephosphorylation]
GO:0046856 [phosphatidylinositol dephosphorylation]
GO:0048488 [synaptic vesicle endocytosis]
GO:0052866 [phosphatidylinositol phosphate phosphatase activity]
Show all
1526 aa
168.2 kDa
No 0
SYNJ1-212
ENSP00000501504
ENST00000674204
O43426
[Direct mapping] Synaptojanin-1
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0003824 [catalytic activity]
GO:0004438 [phosphatidylinositol-3-phosphatase activity]
GO:0004439 [phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005874 [microtubule]
GO:0006629 [lipid metabolic process]
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0006836 [neurotransmitter transport]
GO:0006897 [endocytosis]
GO:0007420 [brain development]
GO:0007612 [learning]
GO:0012506 [vesicle membrane]
GO:0016082 [synaptic vesicle priming]
GO:0016191 [synaptic vesicle uncoating]
GO:0016787 [hydrolase activity]
GO:0016791 [phosphatase activity]
GO:0017124 [SH3 domain binding]
GO:0030117 [membrane coat]
GO:0030132 [clathrin coat of coated pit]
GO:0034595 [phosphatidylinositol phosphate 5-phosphatase activity]
GO:0034596 [phosphatidylinositol phosphate 4-phosphatase activity]
GO:0036092 [phosphatidylinositol-3-phosphate biosynthetic process]
GO:0043195 [terminal bouton]
GO:0043647 [inositol phosphate metabolic process]
GO:0043812 [phosphatidylinositol-4-phosphate phosphatase activity]
GO:0043813 [phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity]
GO:0046488 [phosphatidylinositol metabolic process]
GO:0046855 [inositol phosphate dephosphorylation]
GO:0046856 [phosphatidylinositol dephosphorylation]
GO:0048471 [perinuclear region of cytoplasm]
GO:0048488 [synaptic vesicle endocytosis]
GO:0048489 [synaptic vesicle transport]
GO:0052629 [phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity]
GO:0052658 [inositol-1,4,5-trisphosphate 5-phosphatase activity]
GO:0052866 [phosphatidylinositol phosphate phosphatase activity]
GO:0061024 [membrane organization]
GO:0097060 [synaptic membrane]
GO:0098793 [presynapse]
GO:1904980 [positive regulation of endosome organization]
Show all
1311 aa
144.9 kDa
No 0
SYNJ1-213
ENSP00000501426
ENST00000674308
O43426
[Direct mapping] Synaptojanin-1
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0003824 [catalytic activity]
GO:0004438 [phosphatidylinositol-3-phosphatase activity]
GO:0004439 [phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005874 [microtubule]
GO:0006629 [lipid metabolic process]
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0006836 [neurotransmitter transport]
GO:0006897 [endocytosis]
GO:0007420 [brain development]
GO:0007612 [learning]
GO:0012506 [vesicle membrane]
GO:0016082 [synaptic vesicle priming]
GO:0016191 [synaptic vesicle uncoating]
GO:0016787 [hydrolase activity]
GO:0016791 [phosphatase activity]
GO:0017124 [SH3 domain binding]
GO:0030117 [membrane coat]
GO:0030132 [clathrin coat of coated pit]
GO:0034595 [phosphatidylinositol phosphate 5-phosphatase activity]
GO:0034596 [phosphatidylinositol phosphate 4-phosphatase activity]
GO:0036092 [phosphatidylinositol-3-phosphate biosynthetic process]
GO:0043195 [terminal bouton]
GO:0043647 [inositol phosphate metabolic process]
GO:0043812 [phosphatidylinositol-4-phosphate phosphatase activity]
GO:0043813 [phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity]
GO:0046488 [phosphatidylinositol metabolic process]
GO:0046855 [inositol phosphate dephosphorylation]
GO:0046856 [phosphatidylinositol dephosphorylation]
GO:0048471 [perinuclear region of cytoplasm]
GO:0048488 [synaptic vesicle endocytosis]
GO:0048489 [synaptic vesicle transport]
GO:0052629 [phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity]
GO:0052658 [inositol-1,4,5-trisphosphate 5-phosphatase activity]
GO:0052866 [phosphatidylinositol phosphate phosphatase activity]
GO:0061024 [membrane organization]
GO:0097060 [synaptic membrane]
GO:0098793 [presynapse]
GO:1904980 [positive regulation of endosome organization]
Show all
1573 aa
173.1 kDa
No 0
SYNJ1-214
ENSP00000501530
ENST00000674351
O43426
[Direct mapping] Synaptojanin-1
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0003824 [catalytic activity]
GO:0004438 [phosphatidylinositol-3-phosphatase activity]
GO:0004439 [phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005874 [microtubule]
GO:0006629 [lipid metabolic process]
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0006836 [neurotransmitter transport]
GO:0006897 [endocytosis]
GO:0007420 [brain development]
GO:0007612 [learning]
GO:0008022 [protein C-terminus binding]
GO:0012506 [vesicle membrane]
GO:0014015 [positive regulation of gliogenesis]
GO:0016082 [synaptic vesicle priming]
GO:0016191 [synaptic vesicle uncoating]
GO:0016787 [hydrolase activity]
GO:0016791 [phosphatase activity]
GO:0017124 [SH3 domain binding]
GO:0030117 [membrane coat]
GO:0030132 [clathrin coat of coated pit]
GO:0032526 [response to retinoic acid]
GO:0032991 [protein-containing complex]
GO:0034097 [response to cytokine]
GO:0034595 [phosphatidylinositol phosphate 5-phosphatase activity]
GO:0034596 [phosphatidylinositol phosphate 4-phosphatase activity]
GO:0036092 [phosphatidylinositol-3-phosphate biosynthetic process]
GO:0043005 [neuron projection]
GO:0043195 [terminal bouton]
GO:0043647 [inositol phosphate metabolic process]
GO:0043812 [phosphatidylinositol-4-phosphate phosphatase activity]
GO:0043813 [phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity]
GO:0044877 [protein-containing complex binding]
GO:0046488 [phosphatidylinositol metabolic process]
GO:0046855 [inositol phosphate dephosphorylation]
GO:0046856 [phosphatidylinositol dephosphorylation]
GO:0048260 [positive regulation of receptor-mediated endocytosis]
GO:0048471 [perinuclear region of cytoplasm]
GO:0048488 [synaptic vesicle endocytosis]
GO:0048489 [synaptic vesicle transport]
GO:0052629 [phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity]
GO:0052658 [inositol-1,4,5-trisphosphate 5-phosphatase activity]
GO:0052866 [phosphatidylinositol phosphate phosphatase activity]
GO:0061024 [membrane organization]
GO:0097060 [synaptic membrane]
GO:0098688 [parallel fiber to Purkinje cell synapse]
GO:0098793 [presynapse]
GO:1904980 [positive regulation of endosome organization]
GO:1990175 [EH domain binding]
Show all
1311 aa
144.9 kDa
No 0

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