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PAXBP1
HPA
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  • PAXBP1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PAXBP1
Synonyms C21orf66, fSAP105, GCFC, GCFC1
Gene descriptioni

Full gene name according to HGNC.

PAX3 and PAX7 binding protein 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 21
Cytoband q22.11
Chromosome location (bp) 32733899 - 32771792
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000159086 (version 109)
Entrez gene 94104
HGNC HGNC:13579
UniProt Q9Y5B6 (UniProt - Evidence at protein level)
neXtProt NX_Q9Y5B6
GeneCards PAXBP1
Antibodypedia PAXBP1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Adapter protein linking the transcription factors PAX3 and PAX7 to the histone methylation machinery and involved in myogenesis. Associates with a histone methyltransferase complex that specifically mediates dimethylation and trimethylation of 'Lys-4' of histone H3. Mediates the recruitment of that complex to the transcription factors PAX3 and PAX7 on chromatin to regulate the expression of genes involved in muscle progenitor cells proliferation including ID3 and CDC20.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

DNA-binding
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Myogenesis, Transcription, Transcription regulation
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a protein that may bind to GC-rich DNA sequences, which suggests its involvement in the regulation of transcription. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Jun 2009]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PAXBP1-201
ENSP00000290178
ENST00000290178
Q9Y5B6
[Direct mapping] PAX3- and PAX7-binding protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000398 [mRNA splicing, via spliceosome]
GO:0003677 [DNA binding]
GO:0005634 [nucleus]
GO:0005829 [cytosol]
GO:0006807 [nitrogen compound metabolic process]
GO:0007517 [muscle organ development]
GO:0043170 [macromolecule metabolic process]
GO:0044238 [primary metabolic process]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
Show all
815 aa
93.2 kDa
No 0
PAXBP1-202
ENSP00000328992
ENST00000331923
Q9Y5B6
[Direct mapping] PAX3- and PAX7-binding protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000398 [mRNA splicing, via spliceosome]
GO:0003677 [DNA binding]
GO:0005634 [nucleus]
GO:0005829 [cytosol]
GO:0006366 [transcription by RNA polymerase II]
GO:0006807 [nitrogen compound metabolic process]
GO:0007517 [muscle organ development]
GO:0014842 [regulation of skeletal muscle satellite cell proliferation]
GO:0031062 [positive regulation of histone methylation]
GO:0043170 [macromolecule metabolic process]
GO:0044238 [primary metabolic process]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:1990226 [histone methyltransferase binding]
GO:2000288 [positive regulation of myoblast proliferation]
Show all
917 aa
104.8 kDa
No 0

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