MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.0 nTPM
HPA Brain:134.3 nTPM
GTEx:54.0 nTPM
FANTOM5:24.0 Scaled Tags Per Million
Pig:167.4 nTPM
Mouse:266.5 nTPM
Allen mouse:20.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 134.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.7
1827 Male, age 72, unknown 143.7
2666 Male, age 74, left hemisphere 124.1
2219 Male, age 76, both hemispheres 118.5
2411 Female, age 72, unknown 107.7
2828 Female, age 72, unknown 100.9
1833 Male, age 53, unknown 95.6
2019 Male, age 18, unknown 92.5
1870 Female, age 42, unknown 87.9
1830 Male, age 51, unknown 79.3
2586 Male, age 75, left hemisphere 76.4
Dorsal raphe nucleus
nTPM: 83.0
2298 Female, age 72, unknown 116.0
2750 Male, age 76, both hemispheres 86.4
2047 Male, age 72, unknown 79.9
1828 Male, age 53, unknown 69.7
2016 Female, age 72, unknown 62.7
Inferior colliculus
nTPM: 110.7
2097 Female, age 72, unknown 138.5
1848 Female, age 42, unknown 109.5
1890 Male, age 53, unknown 101.5
2849 Male, age 72, unknown 93.5
Median raphe nucleus
nTPM: 111.2
2220 Male, age 76, midline 111.2
Periaquaductal grey, anterior
nTPM: 134.3
2502 Female, age 75, unknown 161.9
1947 Male, age 18, unknown 130.1
1795 Male, age 51, unknown 111.0
Periaquaductal grey, dorsal
nTPM: 85.2
1840 Male, age 53, unknown 92.9
1831 Male, age 72, unknown 89.7
2464 Female, age 72, unknown 84.0
2850 Male, age 76, both hemispheres 74.4
Periaquaductal grey, lateral
nTPM: 73.3
2053 Male, age 18, unknown 88.7
2140 Male, age 76, both hemispheres 75.3
2272 Male, age 74, both hemispheres 55.9
Pretectal area
nTPM: 113.3
1816 Male, age 51, unknown 167.8
2007 Male, age 72, unknown 140.2
2667 Female, age 75, unknown 139.5
1817 Female, age 42, unknown 135.2
1944 Female, age 72, unknown 133.4
1815 Male, age 53, unknown 120.2
2224 Female, age 72, unknown 96.1
2825 Male, age 18, unknown 94.5
2316 Male, age 76, right hemisphere 89.3
2407 Male, age 75, both hemispheres 78.6
2273 Male, age 74, both hemispheres 51.4
Red nucleus
nTPM: 82.1
1821 Female, age 72, unknown 106.9
1954 Female, age 42, unknown 93.7
2785 Male, age 18, unknown 86.4
2584 Male, age 75, left hemisphere 86.3
2823 Male, age 76, right hemisphere 83.2
2769 Male, age 72, unknown 79.6
2227 Male, age 72, unknown 78.3
1904 Male, age 53, unknown 77.2
2503 Female, age 72, unknown 77.0
2588 Male, age 74, left hemisphere 75.8
1865 Male, age 51, unknown 72.4
2725 Female, age 75, unknown 69.0
Substantia nigra
nTPM: 108.7
1916 Female, age 42, unknown 150.6
1941 Male, age 53, unknown 138.3
2665 Male, age 74, both hemispheres 136.9
1889 Female, age 72, unknown 135.2
1851 Male, age 51, unknown 114.6
2241 Male, age 72, unknown 111.9
2409 Female, age 72, unknown 97.6
2699 Male, age 18, unknown 83.8
2590 Female, age 75, unknown 61.2
2583 Male, age 75, right hemisphere 56.6
Superior colliculus
nTPM: 101.4
1895 Male, age 76, right hemisphere 125.5
2087 Female, age 72, unknown 124.8
2668 Female, age 75, unknown 124.5
1796 Male, age 53, unknown 119.7
2261 Male, age 18, unknown 118.4
1839 Male, age 51, unknown 99.3
2664 Male, age 75, both hemispheres 92.5
2587 Male, age 74, left hemisphere 81.1
1913 Female, age 42, unknown 69.1
1995 Male, age 72, unknown 58.9
Ventral tegmental area
nTPM: 100.8
2410 Female, age 72, unknown 129.0
2218 Male, age 76, both hemispheres 126.1
1915 Female, age 42, unknown 119.3
1942 Male, age 51, unknown 95.8
2021 Male, age 53, unknown 68.6
2223 Female, age 72, unknown 66.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 54.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.0
Samples: 139

Max nTPM: 229.6
Min nTPM: 3.8
Std nTPM: 43.0
Median nTPM: 40.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 229.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 207.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 154.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 146.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 143.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 137.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 127.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 126.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 125.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 123.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 122.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.0
FF:10158-103A5 76 years, female 24.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 167.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 115.2
Samples: 4

Max nTPM: 188.4
Min nTPM: 37.6
Sample A Female 158.6
Sample B Female 76.3
Sample C Male 188.4
Sample D Male 37.6
Midbrain
nTPM: 153.8
Samples: 4

Max nTPM: 301.5
Min nTPM: 35.0
Sample A Female 35.0
Sample B Female 79.8
Sample C Male 301.5
Sample D Male 199.0
Periaqueductal gray
nTPM: 80.9
Samples: 3

Max nTPM: 105.5
Min nTPM: 66.3
Sample B Female 71.0
Sample C Male 105.5
Sample D Male 66.3
Superior colliculi
nTPM: 167.4
Samples: 4

Max nTPM: 239.0
Min nTPM: 82.1
Sample A Female 154.2
Sample B Female 82.1
Sample C Male 239.0
Sample D Male 194.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 266.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 266.5
Samples: 4

Max nTPM: 302.9
Min nTPM: 231.1
Sample A Male 231.1
Sample B Male 260.5
Sample C Female 302.9
Sample D Female 271.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 20.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.9
69012765 Antisense, RP_050309_01_D10, Mouse strain C57BL/6J (56 days, male) 20.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org