MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.8 nTPM
HPA Brain:156.5 nTPM
GTEx:44.8 nTPM
FANTOM5:161.6 Scaled Tags Per Million
Pig:204.8 nTPM
Mouse:51.5 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 156.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.0
2666 Male, age 74, left hemisphere 186.6
1827 Male, age 72, unknown 144.4
2828 Female, age 72, unknown 142.8
2219 Male, age 76, both hemispheres 129.1
2586 Male, age 75, left hemisphere 105.1
1870 Female, age 42, unknown 87.2
2019 Male, age 18, unknown 77.0
1830 Male, age 51, unknown 65.3
2411 Female, age 72, unknown 61.5
1833 Male, age 53, unknown 61.4
Dorsal raphe nucleus
nTPM: 104.1
2047 Male, age 72, unknown 149.0
2298 Female, age 72, unknown 109.5
2750 Male, age 76, both hemispheres 108.5
1828 Male, age 53, unknown 89.2
2016 Female, age 72, unknown 64.5
Inferior colliculus
nTPM: 98.1
2097 Female, age 72, unknown 119.6
2849 Male, age 72, unknown 98.1
1890 Male, age 53, unknown 97.8
1848 Female, age 42, unknown 76.9
Median raphe nucleus
nTPM: 144.9
2220 Male, age 76, midline 144.9
Periaquaductal grey, anterior
nTPM: 156.5
1795 Male, age 51, unknown 216.8
1947 Male, age 18, unknown 139.3
2502 Female, age 75, unknown 113.3
Periaquaductal grey, dorsal
nTPM: 98.4
2850 Male, age 76, both hemispheres 119.6
1831 Male, age 72, unknown 119.4
1840 Male, age 53, unknown 89.6
2464 Female, age 72, unknown 65.0
Periaquaductal grey, lateral
nTPM: 100.4
2140 Male, age 76, both hemispheres 111.7
2272 Male, age 74, both hemispheres 98.3
2053 Male, age 18, unknown 91.2
Pretectal area
nTPM: 132.3
1816 Male, age 51, unknown 193.2
2667 Female, age 75, unknown 173.2
1944 Female, age 72, unknown 153.5
2007 Male, age 72, unknown 148.0
1817 Female, age 42, unknown 139.9
1815 Male, age 53, unknown 120.5
2273 Male, age 74, both hemispheres 117.3
2825 Male, age 18, unknown 106.0
2224 Female, age 72, unknown 104.6
2316 Male, age 76, right hemisphere 99.9
2407 Male, age 75, both hemispheres 99.5
Red nucleus
nTPM: 62.2
2584 Male, age 75, left hemisphere 108.7
2725 Female, age 75, unknown 94.6
2785 Male, age 18, unknown 91.3
2588 Male, age 74, left hemisphere 71.9
2503 Female, age 72, unknown 71.0
2227 Male, age 72, unknown 51.4
1954 Female, age 42, unknown 48.7
2769 Male, age 72, unknown 48.0
2823 Male, age 76, right hemisphere 43.5
1821 Female, age 72, unknown 40.0
1904 Male, age 53, unknown 39.3
1865 Male, age 51, unknown 37.7
Substantia nigra
nTPM: 78.1
1941 Male, age 53, unknown 149.1
1889 Female, age 72, unknown 98.4
1916 Female, age 42, unknown 97.1
2665 Male, age 74, both hemispheres 94.1
2583 Male, age 75, right hemisphere 79.6
1851 Male, age 51, unknown 71.4
2699 Male, age 18, unknown 65.6
2409 Female, age 72, unknown 45.4
2590 Female, age 75, unknown 43.3
2241 Male, age 72, unknown 37.2
Superior colliculus
nTPM: 113.9
1796 Male, age 53, unknown 150.5
2261 Male, age 18, unknown 143.8
2664 Male, age 75, both hemispheres 140.3
1839 Male, age 51, unknown 114.0
2087 Female, age 72, unknown 113.7
2668 Female, age 75, unknown 112.2
1913 Female, age 42, unknown 110.4
2587 Male, age 74, left hemisphere 94.0
1995 Male, age 72, unknown 92.3
1895 Male, age 76, right hemisphere 67.6
Ventral tegmental area
nTPM: 99.9
2223 Female, age 72, unknown 148.5
2021 Male, age 53, unknown 102.8
1942 Male, age 51, unknown 100.9
2218 Male, age 76, both hemispheres 97.7
1915 Female, age 42, unknown 95.8
2410 Female, age 72, unknown 53.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.8
Samples: 139

Max nTPM: 136.8
Min nTPM: 0.0
Std nTPM: 24.2
Median nTPM: 45.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 136.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 122.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 114.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 108.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 104.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 87.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 80.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 78.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 76.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 76.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 76.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 161.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 161.6
FF:10158-103A5 76 years, female 161.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 204.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 146.3
Samples: 4

Max nTPM: 169.9
Min nTPM: 92.8
Sample A Female 169.9
Sample B Female 158.4
Sample C Male 163.9
Sample D Male 92.8
Midbrain
nTPM: 167.3
Samples: 4

Max nTPM: 236.6
Min nTPM: 122.6
Sample A Female 145.3
Sample B Female 122.6
Sample C Male 236.6
Sample D Male 164.7
Periaqueductal gray
nTPM: 108.8
Samples: 3

Max nTPM: 131.9
Min nTPM: 95.1
Sample B Female 99.4
Sample C Male 131.9
Sample D Male 95.1
Superior colliculi
nTPM: 204.9
Samples: 4

Max nTPM: 223.9
Min nTPM: 170.6
Sample A Female 223.7
Sample B Female 223.9
Sample C Male 201.2
Sample D Male 170.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 51.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.5
Samples: 4

Max nTPM: 61.0
Min nTPM: 45.7
Sample A Male 61.0
Sample B Male 51.0
Sample C Female 45.7
Sample D Female 48.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
68798711 Antisense, RP_050217_01_B02, Mouse strain C57BL/6J (56 days, male) 5.7

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