Expression of PSMD4 in liver cancer - The Human Protein Atlas

LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

PSMD4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 276.98

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average pTPM

328.2

Number of samples

362

Samples

Sample	Description	pTPM
TCGA-BC-A217-01A	75 years, female, white, stage:Stage II, dead, 1397 days	2534.3
TCGA-DD-A3A7-01A	67 years, male, stage:Stage IIIB, dead, 419 days	1150.5
TCGA-DD-AAVP-01A	48 years, male, asian, stage:Stage I, alive, 2752 days	1122.0
TCGA-DD-AACI-01A	69 years, male, asian, stage:Stage II, alive, 1618 days	1057.8
TCGA-DD-A39V-01A	77 years, male, white, stage:Stage II, dead, 643 days	955.5
TCGA-CC-A5UD-01A	45 years, male, asian, stage:Stage IIIA, dead, 304 days	914.7
TCGA-G3-A25S-01A	64 years, male, white, stage:Stage I, dead, 416 days	836.3
TCGA-DD-AAC8-01A	72 years, male, asian, stage:Stage I, dead, 16 days	829.2
TCGA-DD-A116-01A	68 years, male, asian, stage:Stage IIIA, dead, 1622 days	803.5
TCGA-DD-A39X-01A	78 years, female, white, stage:Stage I, dead, 1694 days	788.6
TCGA-RC-A7SH-01A	42 years, male, asian, stage:Stage II, alive, 468 days	778.1
TCGA-DD-AAEB-01A	60 years, male, asian, stage:Stage I, alive, 478 days	713.8
TCGA-CC-A7IG-01A	47 years, male, asian, stage:Stage II, dead, 299 days	697.7
TCGA-DD-AACJ-01A	75 years, male, asian, stage:Stage II, alive, 2102 days	689.9
TCGA-DD-AADO-01A	55 years, male, asian, stage:Stage I, alive, 453 days	687.1
TCGA-WX-AA44-01A	64 years, female, white, stage:Stage I, alive, 615 days	684.0
TCGA-BC-A3KG-01A	68 years, female, white, stage:Stage II, alive, 680 days	655.8
TCGA-DD-A4NN-01A	56 years, female, white, stage:Stage I, dead, 899 days	641.4
TCGA-DD-A39Y-01A	67 years, male, asian, stage:Stage I, dead, 171 days	641.0
TCGA-FV-A4ZP-01A	78 years, male, white, stage:Stage IIIA, dead, 2486 days	631.2
TCGA-DD-AAVV-01A	56 years, male, asian, stage:Stage II, alive, 2455 days	624.9
TCGA-ED-A7PY-01A	20 years, female, asian, stage:Stage II, alive, 390 days	624.6
TCGA-DD-AADI-01A	43 years, female, asian, stage:Stage I, alive, 1085 days	623.0
TCGA-ED-A7PZ-01A	61 years, male, asian, stage:Stage II, alive, 6 days	620.0
TCGA-KR-A7K7-01A	61 years, female, white, stage:Stage II, alive, 951 days	616.6
TCGA-CC-A7IH-01A	58 years, male, asian, stage:Stage IIIA, alive, 365 days	615.3
TCGA-DD-AACB-01A	74 years, female, asian, stage:Stage I, alive, 2324 days	613.8
TCGA-BC-A10W-01A	50 years, male, asian, stage:'--, dead, 91 days	604.8
TCGA-G3-AAV7-01A	38 years, male, asian, stage:Stage II, alive, 361 days	600.0
TCGA-MI-A75H-01A	77 years, male, white, stage:'--, alive, 747 days	597.2
TCGA-DD-AAD0-01A	73 years, female, asian, stage:Stage I, alive, 137 days	590.2
TCGA-DD-A39W-01A	29 years, female, white, stage:Stage III, dead, 827 days	588.8
TCGA-DD-A4NF-01A	72 years, male, white, stage:Stage I, alive, 942 days	588.8
TCGA-CC-A3MC-01A	54 years, male, asian, stage:Stage IIIA, alive, 363 days	588.2
TCGA-DD-A1EL-01A	23 years, male, black or african american, stage:Stage II, dead, 415 days	578.2
TCGA-CC-A7IK-01A	59 years, male, asian, stage:Stage IIIA, dead, 262 days	565.2
TCGA-DD-AACH-01A	69 years, male, asian, stage:Stage II, dead, 195 days	562.5
TCGA-G3-A25X-01A	73 years, male, asian, stage:Stage II, alive, 1779 days	555.9
TCGA-DD-AADC-01A	53 years, male, asian, stage:Stage I, dead, 425 days	553.2
TCGA-CC-A1HT-01A	50 years, male, asian, stage:Stage IIIA, dead, 101 days	543.1
TCGA-DD-AAEG-01A	59 years, female, asian, stage:Stage I, alive, 719 days	530.6
TCGA-EP-A12J-01A	62 years, male, black or african american, stage:Stage I, alive, 570 days	527.0
TCGA-DD-AADF-01A	64 years, female, asian, stage:Stage I, dead, 115 days	521.0
TCGA-FV-A495-01A	51 years, female, white, stage:Stage II, alive, 1 days	520.1
TCGA-5R-AA1C-01A	57 years, male, white, stage:Stage II, alive, 520 days	514.7
TCGA-DD-AADD-01A	51 years, male, asian, stage:Stage I, alive, 1231 days	505.8
TCGA-LG-A9QC-01A	48 years, male, white, stage:Stage I, alive, 425 days	505.3
TCGA-UB-A7MC-01A	59 years, male, white, stage:Stage IIIA, alive, 500 days	503.9
TCGA-DD-AADM-01A	58 years, male, asian, stage:Stage II, dead, 12 days	498.1
TCGA-DD-A3A8-01A	75 years, male, white, stage:Stage II, dead, 11 days	495.8
TCGA-DD-A73E-01A	66 years, male, white, stage:Stage I, alive, 44 days	494.4
TCGA-DD-AAVQ-01A	38 years, male, asian, stage:Stage I, alive, 2728 days	494.3
TCGA-ED-A7XP-01A	53 years, female, asian, stage:Stage II, alive, 400 days	493.6
TCGA-DD-AACS-01A	39 years, male, asian, stage:Stage I, alive, 1804 days	490.3
TCGA-EP-A3RK-01A	73 years, male, white, stage:Stage IIIA, alive, 363 days	489.5
TCGA-G3-AAV5-01A	67 years, male, white, stage:Stage II, alive, 354 days	489.3
TCGA-G3-A3CJ-01A	52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days	489.0
TCGA-UB-A7MA-01A	62 years, female, white, stage:Stage II, alive, 848 days	484.8
TCGA-DD-AAEE-01A	55 years, male, asian, stage:Stage I, alive, 810 days	482.8
TCGA-CC-A8HV-01A	51 years, female, asian, stage:Stage II, dead, 279 days	480.2
TCGA-DD-AAE9-01A	69 years, male, asian, stage:Stage I, alive, 722 days	475.7
TCGA-ES-A2HT-01A	54 years, male, black or african american, stage:Stage I, dead, 438 days	465.2
TCGA-CC-A8HU-01A	39 years, female, asian, stage:Stage IIIA, dead, 344 days	462.7
TCGA-DD-AAVY-01A	56 years, male, asian, stage:Stage IIIA, alive, 1970 days	458.8
TCGA-EP-A26S-01A	70 years, male, white, stage:Stage I, alive, 608 days	455.5
TCGA-DD-A3A9-01A	64 years, female, white, stage:Stage IVB, dead, 931 days	454.7
TCGA-G3-AAV3-01A	58 years, female, white, stage:Stage II, alive, 412 days	452.0
TCGA-DD-A119-01A	40 years, male, asian, stage:Stage IV, dead, 223 days	451.1
TCGA-BC-A69H-01A	64 years, male, white, stage:Stage II, alive, 444 days	450.8
TCGA-UB-A7MB-01A	24 years, male, white, stage:Stage II, alive, 601 days	446.2
TCGA-G3-AAV2-01A	50 years, male, white, stage:Stage I, alive, 372 days	445.8
TCGA-DD-A73G-01A	73 years, female, white, stage:Stage I, alive, 3478 days	445.6
TCGA-KR-A7K2-01A	64 years, male, white, stage:Stage I, alive, 829 days	437.7
TCGA-WQ-AB4B-01A	62 years, male, white, stage:Stage II, alive, 395 days	436.5
TCGA-FV-A2QR-01A	75 years, male, white, stage:Stage I, dead, 581 days	435.7
TCGA-DD-AAD5-01A	54 years, male, asian, stage:Stage I, alive, 1345 days	434.7
TCGA-ZP-A9D2-01A	51 years, male, white, stage:'--, dead, 765 days	432.0
TCGA-YA-A8S7-01A	68 years, male, white, stage:Stage IIIA, dead, 412 days	431.8
TCGA-DD-AADG-01A	70 years, male, asian, stage:Stage IIIA, alive, 1145 days	429.1
TCGA-KR-A7K0-01A	65 years, male, white, stage:Stage I, dead, 65 days	425.8
TCGA-G3-A7M9-01A	70 years, male, white, stage:Stage IIIB, dead, 56 days	424.3
TCGA-WQ-A9G7-01A	71 years, female, white, stage:'--, alive, 30 days	422.1
TCGA-DD-AA3A-01A	81 years, female, white, stage:Stage I, dead, 410 days	420.2
TCGA-DD-AAE0-01A	45 years, female, asian, stage:Stage IIIA, alive, 555 days	420.0
TCGA-2Y-A9GY-01A	64 years, female, white, stage:Stage II, dead, 757 days	419.0
TCGA-DD-A1EG-01A	76 years, male, white, stage:Stage I, dead, 1372 days	418.0
TCGA-DD-AACA-01A	65 years, male, asian, stage:Stage I, alive, 2301 days	417.8
TCGA-ZS-A9CG-01A	55 years, male, white, stage:Stage II, alive, 341 days	417.2
TCGA-DD-A1EE-01A	73 years, male, white, stage:Stage IIIA, dead, 349 days	416.8
TCGA-DD-AACL-01A	66 years, female, asian, stage:Stage I, dead, 107 days	415.7
TCGA-DD-AAED-01A	51 years, male, asian, stage:Stage I, alive, 763 days	412.3
TCGA-DD-A1EA-01A	68 years, male, asian, stage:Stage II, alive, 2415 days	411.5
TCGA-CC-A8HT-01A	74 years, male, asian, stage:Stage IIIA, dead, 140 days	409.5
TCGA-BC-A10U-01A	69 years, male, white, stage:'--, dead, 837 days	408.3
TCGA-CC-A5UE-01A	48 years, male, asian, stage:Stage IIIB, dead, 272 days	407.2
TCGA-O8-A75V-01A	54 years, male, stage:Stage I, alive, 538 days	407.0
TCGA-DD-A73D-01A	68 years, female, white, stage:Stage II, alive, 693 days	406.7
TCGA-DD-AAW1-01A	55 years, male, asian, stage:Stage IIIA, alive, 1989 days	405.5
TCGA-G3-AAV6-01A	53 years, female, white, stage:Stage IIIA, dead, 65 days	404.7
TCGA-2Y-A9H1-01A	58 years, male, white, stage:Stage I, dead, 1229 days	403.7
TCGA-BC-A69I-01A	69 years, male, white, stage:Stage I, alive, 387 days	400.9
TCGA-BC-A8YO-01A	66 years, female, white, stage:Stage IIIC, alive, 562 days	400.8
TCGA-5C-A9VG-01A	58 years, male, white, stage:Stage II, alive, 328 days	386.1
TCGA-5C-A9VH-01A	70 years, male, white, stage:Stage I, alive, 322 days	381.9
TCGA-DD-A3A6-01A	72 years, female, white, stage:Stage II, dead, 3258 days	379.7
TCGA-DD-A3A3-01A	45 years, male, asian, stage:Stage I, dead, 535 days	379.7
TCGA-CC-A3MA-01A	61 years, male, asian, stage:Stage IIIA, dead, 303 days	379.6
TCGA-DD-AACX-01A	66 years, male, asian, stage:Stage II, alive, 170 days	378.5
TCGA-G3-AAV4-01A	83 years, female, white, stage:Stage I, dead, 27 days	377.8
TCGA-CC-A7IL-01A	61 years, male, asian, stage:Stage IIIA, dead, 278 days	376.5
TCGA-DD-AACO-01A	40 years, male, asian, stage:Stage I, alive, 1876 days	374.2
TCGA-UB-A7MD-01A	67 years, male, black or african american, stage:Stage I, dead, 52 days	373.3
TCGA-CC-5259-01A	60 years, female, asian, stage:Stage IIIC, alive, 250 days	372.2
TCGA-G3-A25Y-01A	52 years, female, asian, stage:Stage I, dead, 452 days	371.6
TCGA-XR-A8TG-01A	58 years, male, white, stage:Stage I, alive, 898 days	370.4
TCGA-DD-AAE6-01A	59 years, female, asian, stage:Stage I, alive, 141 days	367.7
TCGA-CC-5264-01A	71 years, male, asian, stage:Stage IIIA, dead, 102 days	367.3
TCGA-DD-AAVU-01A	46 years, male, asian, stage:Stage II, alive, 2202 days	367.3
TCGA-RG-A7D4-01A	69 years, male, black or african american, stage:Stage II, alive, 1098 days	365.6
TCGA-CC-A9FW-01A	68 years, male, asian, stage:Stage IIIA, alive, 248 days	364.9
TCGA-ZP-A9CV-01A	59 years, male, white, stage:'--, dead, 1088 days	364.2
TCGA-DD-AAD8-01A	73 years, female, asian, stage:Stage I, alive, 1219 days	358.1
TCGA-XR-A8TE-01A	16 years, male, white, stage:Stage IIIA, alive, 925 days	357.1
TCGA-BW-A5NO-01A	50 years, male, black or african american, stage:Stage IIIA, alive, 20 days	356.1
TCGA-EP-A3JL-01A	76 years, male, white, stage:Stage I, alive, 303 days	354.1
TCGA-DD-AAVZ-01A	38 years, male, asian, stage:Stage I, alive, 1900 days	352.6
TCGA-3K-AAZ8-01A	65 years, male, black or african american, stage:Stage IIIB, alive, 396 days	347.9
TCGA-DD-AACD-01A	48 years, male, asian, stage:Stage I, dead, 381 days	347.9
TCGA-DD-A3A1-01A	65 years, male, stage:Stage IIIA, dead, 233 days	346.1
TCGA-XR-A8TF-01A	74 years, male, white, stage:Stage I, dead, 693 days	345.3
TCGA-DD-AACP-01A	64 years, male, asian, stage:Stage I, alive, 415 days	343.4
TCGA-CC-A3MB-01A	36 years, male, asian, stage:Stage IIIA, dead, 315 days	342.3
TCGA-EP-A2KB-01A	46 years, female, white, stage:Stage I, dead, 596 days	341.8
TCGA-DD-AACF-01A	68 years, male, asian, stage:Stage I, dead, 365 days	341.4
TCGA-ZP-A9D4-01A	64 years, female, white, stage:'--, alive, 395 days	340.9
TCGA-G3-A3CK-01A	61 years, male, asian, stage:Stage I, alive, 585 days	340.2
TCGA-2Y-A9GS-01A	58 years, male, white, stage:'--, dead, 724 days	337.4
TCGA-5C-AAPD-01A	61 years, male, asian, stage:Stage II, alive, 20 days	333.6
TCGA-G3-AAV0-01A	58 years, male, asian, stage:Stage I, alive, 476 days	333.2
TCGA-ED-A66X-01A	35 years, male, asian, stage:Stage IIIA, alive, 406 days	332.9
TCGA-DD-AADU-01A	60 years, male, asian, stage:Stage II, alive, 554 days	329.2
TCGA-FV-A3I1-01A	81 years, female, white, stage:Stage II, dead, 247 days	326.9
TCGA-EP-A2KC-01A	62 years, male, black or african american, stage:Stage I, dead, 19 days	326.2
TCGA-DD-AACU-01A	59 years, male, asian, stage:Stage I, alive, 1567 days	325.9
TCGA-MI-A75G-01A	63 years, male, white, stage:Stage II, alive, 698 days	325.5
TCGA-DD-AAEA-01A	65 years, male, asian, stage:Stage I, alive, 575 days	324.7
TCGA-DD-AAE3-01A	50 years, male, asian, stage:Stage I, alive, 566 days	324.6
TCGA-G3-A5SL-01A	70 years, male, white, stage:Stage II, alive, 621 days	324.0
TCGA-DD-AACG-01A	52 years, male, asian, stage:Stage II, dead, 469 days	323.6
TCGA-DD-A4NH-01A	65 years, female, white, stage:Stage IIIB, alive, 917 days	323.4
TCGA-DD-A113-01A	55 years, female, white, stage:Stage II, alive, 2425 days	322.0
TCGA-FV-A2QQ-01A	80 years, male, white, stage:Stage I, alive, 729 days	320.2
TCGA-DD-A114-01A	42 years, male, black or african american, stage:Stage II, dead, 1149 days	318.9
TCGA-DD-AAVS-01A	56 years, male, asian, stage:Stage I, alive, 1823 days	317.7
TCGA-RC-A6M4-01A	74 years, female, white, stage:Stage IIIA, alive, 22 days	317.0
TCGA-DD-A39Z-01A	43 years, female, stage:Stage II, dead, 601 days	315.1
TCGA-UB-A7ME-01A	51 years, male, asian, stage:Stage I, alive, 486 days	314.7
TCGA-2Y-A9HA-01A	70 years, male, white, stage:Stage II, dead, 36 days	313.7
TCGA-DD-AAW2-01A	69 years, male, asian, stage:Stage I, alive, 1855 days	311.3
TCGA-QA-A7B7-01A	48 years, male, black or african american, stage:Stage II, alive, 94 days	310.1
TCGA-DD-AACW-01A	43 years, male, asian, stage:Stage I, alive, 1424 days	309.4
TCGA-G3-A3CG-01A	80 years, male, white, stage:Stage I, alive, 673 days	307.7
TCGA-BC-A10Z-01A	62 years, female, white, stage:Stage I, dead, 34 days	306.3
TCGA-CC-5261-01A	44 years, male, asian, stage:Stage II, dead, 97 days	305.4
TCGA-DD-A3A5-01A	66 years, female, white, stage:Stage III, dead, 3125 days	305.3
TCGA-DD-AACN-01A	32 years, male, asian, stage:Stage I, alive, 1302 days	301.9
TCGA-ZS-A9CD-01A	73 years, male, white, stage:Stage II, dead, 1386 days	301.8
TCGA-G3-A6UC-01A	65 years, male, white, stage:Stage IIIB, alive, 671 days	300.9
TCGA-UB-A7MF-01A	56 years, male, white, stage:Stage IIIA, dead, 214 days	297.9
TCGA-DD-AAW3-01A	69 years, male, asian, stage:Stage I, alive, 1633 days	296.4
TCGA-CC-5262-01A	67 years, male, asian, stage:Stage IIIC, dead, 103 days	296.3
TCGA-MI-A75I-01A	61 years, male, black or african american, stage:'--, alive, 630 days	295.2
TCGA-DD-AAVR-01A	44 years, male, asian, stage:Stage I, alive, 2513 days	294.9
TCGA-DD-AACZ-01A	63 years, female, asian, stage:Stage I, dead, 171 days	292.7
TCGA-BC-A112-01A	80 years, male, white, stage:'--, dead, 153 days	292.3
TCGA-ZP-A9CZ-01A	72 years, male, asian, stage:'--, alive, 706 days	291.5
TCGA-DD-AADS-01A	63 years, male, asian, stage:Stage I, alive, 474 days	290.7
TCGA-DD-AADW-01A	48 years, male, asian, stage:Stage I, alive, 587 days	287.4
TCGA-2Y-A9H8-01A	85 years, female, white, stage:'--, dead, 633 days	286.2
TCGA-CC-A8HS-01A	18 years, male, asian, stage:Stage IIIC, dead, 300 days	285.0
TCGA-DD-AADJ-01A	70 years, female, asian, stage:Stage I, alive, 1066 days	284.1
TCGA-G3-AAV1-01A	51 years, male, asian, stage:Stage IIIC, dead, 359 days	283.3
TCGA-XR-A8TC-01A	43 years, female, white, stage:Stage I, alive, 1339 days	282.6
TCGA-DD-AAE1-01A	52 years, male, asian, stage:Stage I, alive, 552 days	281.9
TCGA-G3-A5SI-01A	44 years, male, asian, stage:Stage II, dead, 768 days	281.0
TCGA-RC-A7SK-01A	59 years, male, asian, stage:Stage I, alive, 472 days	278.1
TCGA-T1-A6J8-01A	68 years, male, white, stage:'--, alive, 23 days	277.6
TCGA-4R-AA8I-01A	66 years, male, white, stage:Stage II, dead, 262 days	277.0
TCGA-2Y-A9H0-01A	49 years, male, white, stage:Stage IIIA, alive, 3675 days	276.6
TCGA-DD-A4NP-01A	32 years, male, white, stage:Stage I, alive, 3308 days	276.4
TCGA-BC-A10Y-01A	76 years, male, white, stage:'--, dead, 711 days	274.6
TCGA-DD-AAEH-01A	73 years, male, asian, stage:Stage I, alive, 784 days	270.0
TCGA-BC-A5W4-01A	69 years, male, white, stage:Stage IIIA, dead, 547 days	269.9
TCGA-DD-AACT-01A	69 years, female, asian, stage:Stage I, alive, 1562 days	269.8
TCGA-2Y-A9H3-01A	45 years, male, white, stage:Stage II, alive, 1516 days	268.0
TCGA-DD-AADK-01A	68 years, female, asian, stage:Stage II, alive, 1049 days	266.0
TCGA-CC-A123-01A	24 years, female, asian, stage:Stage IIIA, alive, 219 days	263.4
TCGA-DD-AACQ-01A	50 years, male, asian, stage:Stage II, dead, 432 days	263.2
TCGA-2Y-A9H4-01A	68 years, male, black or african american, stage:Stage I, alive, 1452 days	261.7
TCGA-ED-A8O5-01A	59 years, female, asian, stage:Stage IIIA, alive, 406 days	261.4
TCGA-DD-AADA-01A	66 years, female, asian, stage:Stage I, alive, 1233 days	259.7
TCGA-ED-A5KG-01A	60 years, female, asian, stage:Stage II, alive, 854 days	256.9
TCGA-CC-A3M9-01A	45 years, male, asian, stage:Stage IIIA, dead, 300 days	256.8
TCGA-DD-AADN-01A	59 years, male, asian, stage:Stage I, alive, 898 days	256.5
TCGA-G3-A7M6-01A	60 years, female, white, stage:Stage I, alive, 632 days	256.1
TCGA-ED-A7PX-01A	48 years, female, asian, stage:Stage II, alive, 6 days	254.9
TCGA-DD-AADY-01A	55 years, female, asian, stage:Stage I, alive, 555 days	253.3
TCGA-EP-A2KA-01A	52 years, female, white, stage:Stage IIIA, dead, 627 days	252.8
TCGA-DD-A1EF-01A	57 years, female, white, stage:Stage I, dead, 394 days	252.8
TCGA-HP-A5MZ-01A	78 years, male, stage:Stage I, dead, 91 days	252.4
TCGA-DD-AADV-01A	50 years, male, asian, stage:Stage I, alive, 574 days	252.0
TCGA-DD-A1EJ-01A	71 years, female, white, stage:Stage IIIC, dead, 1005 days	251.2
TCGA-K7-A6G5-01A	66 years, male, white, stage:Stage I, alive, 512 days	251.0
TCGA-DD-A1EI-01A	46 years, male, asian, stage:Stage I, alive, 183 days	250.7
TCGA-DD-A4NO-01A	65 years, male, white, stage:Stage I, alive, 2245 days	250.2
TCGA-FV-A4ZQ-01A	52 years, male, white, stage:Stage I, alive, 12 days	246.5
TCGA-ED-A7XO-01A	29 years, male, asian, stage:Stage IIIA, alive, 427 days	245.6
TCGA-BC-A216-01A	62 years, female, white, stage:Stage IIIA, alive, 1351 days	245.4
TCGA-DD-AAW0-01A	54 years, male, asian, stage:Stage I, alive, 2015 days	244.7
TCGA-ED-A8O6-01A	50 years, female, asian, stage:Stage IIIA, dead, 56 days	239.7
TCGA-CC-A7IJ-01A	56 years, male, asian, stage:Stage II, alive, 382 days	239.7
TCGA-CC-A7IE-01A	57 years, male, asian, stage:Stage IIIA, dead, 217 days	239.6
TCGA-2Y-A9H9-01A	70 years, male, white, stage:Stage I, alive, 697 days	238.6
TCGA-DD-A1EH-01A	23 years, male, white, stage:Stage III, alive, 1495 days	237.8
TCGA-ZP-A9D1-01A	56 years, female, white, stage:'--, alive, 21 days	235.3
TCGA-KR-A7K8-01A	57 years, male, stage:Stage I, alive, 906 days	234.7
TCGA-G3-AAUZ-01A	48 years, male, stage:Stage I, alive, 480 days	234.3
TCGA-PD-A5DF-01A	58 years, female, white, stage:Stage IIIB, dead, 639 days	233.2
TCGA-ZP-A9D0-01A	67 years, female, black or african american, stage:'--, alive, 1091 days	232.4
TCGA-DD-AACV-01A	53 years, male, asian, stage:Stage I, alive, 1531 days	230.9
TCGA-RC-A6M6-01A	75 years, male, white, stage:Stage II, alive, 9 days	230.6
TCGA-WX-AA47-01A	33 years, female, white, stage:Stage IIIA, dead, 556 days	230.4
TCGA-DD-AAD3-01A	43 years, male, asian, stage:Stage I, alive, 1295 days	230.0
TCGA-DD-A4NQ-01A	60 years, male, white, stage:Stage II, dead, 373 days	229.5
TCGA-DD-AAC9-01A	51 years, male, asian, stage:Stage I, alive, 347 days	228.8
TCGA-2Y-A9H6-01A	68 years, female, white, stage:Stage I, alive, 357 days	227.7
TCGA-CC-A5UC-01A	63 years, male, asian, stage:Stage IIIA, dead, 347 days	227.4
TCGA-2Y-A9H2-01A	64 years, female, white, stage:Stage I, alive, 1731 days	227.3
TCGA-MI-A75E-01A	61 years, male, white, stage:Stage IIIC, alive, 507 days	226.2
TCGA-CC-A7II-01A	54 years, male, asian, stage:Stage IIIA, alive, 399 days	226.0
TCGA-DD-A4NS-01A	61 years, female, white, stage:Stage I, dead, 2456 days	225.6
TCGA-G3-A25Z-01A	58 years, male, asian, stage:Stage I, alive, 655 days	225.3
TCGA-CC-5258-01A	48 years, male, asian, stage:Stage II, dead, 129 days	224.6
TCGA-NI-A8LF-01A	74 years, male, white, stage:Stage I, alive, 799 days	223.6
TCGA-DD-A4NR-01A	85 years, female, white, stage:Stage I, dead, 9 days	223.1
TCGA-G3-A7M7-01A	65 years, male, white, stage:Stage I, alive, 361 days	222.2
TCGA-2Y-A9H5-01A	59 years, female, white, stage:Stage I, dead, 555 days	219.7
TCGA-GJ-A3OU-01A	59 years, male, white, stage:Stage I, alive, 879 days	217.5
TCGA-BD-A2L6-01A	69 years, male, white, stage:'--, alive, 1363 days	217.3
TCGA-CC-A7IF-01A	59 years, male, asian, stage:Stage IIIA, dead, 649 days	217.3
TCGA-2Y-A9GW-01A	64 years, male, white, stage:Stage I, dead, 1271 days	217.0
TCGA-GJ-A6C0-01A	75 years, female, white, stage:Stage II, dead, 31 days	216.1
TCGA-MI-A75C-01A	64 years, male, white, stage:Stage I, alive, 291 days	213.7
TCGA-ES-A2HS-01A	80 years, male, white, stage:Stage I, dead, 688 days	213.0
TCGA-DD-A4NJ-01A	54 years, female, white, stage:Stage II, alive, 928 days	210.2
TCGA-DD-AAE4-01A	49 years, female, asian, stage:Stage I, alive, 608 days	209.2
TCGA-ED-A459-01A	47 years, male, asian, stage:Stage II, alive, 910 days	208.8
TCGA-G3-A5SM-01A	58 years, male, white, stage:Stage II, alive, 520 days	206.8
TCGA-DD-AADR-01A	58 years, male, asian, stage:Stage I, alive, 2028 days	206.2
TCGA-DD-A1EB-01A	72 years, female, stage:Stage I, alive, 2017 days	205.2
TCGA-HP-A5N0-01A	90 years, female, stage:'--, dead, 752 days	200.8
TCGA-DD-AADP-01A	45 years, male, asian, stage:Stage I, alive, 458 days	199.3
TCGA-DD-AADQ-01A	59 years, male, asian, stage:Stage II, alive, 436 days	199.3
TCGA-DD-AACC-01A	61 years, male, asian, stage:Stage I, dead, 1685 days	198.4
TCGA-G3-A25T-01A	45 years, female, white, stage:Stage IIIA, alive, 1553 days	197.6
TCGA-DD-AAEK-01A	51 years, male, asian, stage:Stage II, alive, 1067 days	197.5
TCGA-WJ-A86L-01A	68 years, female, white, stage:Stage I, alive, 345 days	196.3
TCGA-DD-AAVW-01A	35 years, male, asian, stage:Stage I, alive, 2317 days	194.6
TCGA-DD-A4NV-01A	61 years, male, white, stage:Stage IIIA, alive, 2398 days	193.7
TCGA-FV-A23B-01A	70 years, female, white, stage:Stage II, dead, 1852 days	193.5
TCGA-FV-A3R2-01A	75 years, male, white, stage:Stage I, dead, 194 days	193.3
TCGA-DD-A11C-01A	69 years, male, white, stage:Stage I, alive, 662 days	193.3
TCGA-DD-A115-01A	53 years, male, white, stage:Stage IIIA, dead, 2542 days	193.2
TCGA-BC-A3KF-01A	66 years, female, white, stage:Stage I, alive, 8 days	193.2
TCGA-DD-AADL-01A	58 years, male, asian, stage:Stage I, alive, 636 days	193.1
TCGA-DD-AADB-01A	51 years, male, asian, stage:Stage I, alive, 1242 days	192.7
TCGA-DD-AACY-01A	61 years, male, asian, stage:Stage I, alive, 1450 days	189.1
TCGA-DD-AACE-01A	62 years, male, asian, stage:Stage I, alive, 2184 days	188.6
TCGA-DD-A11D-01A	57 years, female, white, stage:Stage I, dead, 1560 days	187.1
TCGA-LG-A6GG-01A	79 years, female, white, stage:Stage II, alive, 387 days	186.7
TCGA-ZS-A9CE-01A	79 years, female, white, stage:Stage II, alive, 1241 days	186.3
TCGA-G3-A25U-01A	63 years, female, asian, stage:Stage I, alive, 1636 days	184.5
TCGA-CC-5260-01A	61 years, female, asian, stage:Stage IIIC, dead, 87 days	184.0
TCGA-DD-AAD2-01A	66 years, male, asian, stage:Stage I, alive, 658 days	183.9
TCGA-FV-A496-01A	84 years, female, white, stage:Stage I, alive, 10 days	183.7
TCGA-G3-A7M5-01A	76 years, male, asian, stage:Stage I, alive, 447 days	182.7
TCGA-DD-AAD6-01A	66 years, male, asian, stage:Stage IIIA, alive, 672 days	181.7
TCGA-CC-5263-01A	35 years, male, asian, stage:Stage IIIA, dead, 129 days	181.5
TCGA-RC-A7SB-01A	53 years, male, asian, stage:Stage II, alive, 588 days	181.0
TCGA-BD-A3EP-01A	75 years, female, black or african american, stage:Stage I, alive, 409 days	180.7
TCGA-2Y-A9H7-01A	81 years, female, white, stage:Stage I, alive, 1168 days	180.2
TCGA-GJ-A9DB-01A	68 years, male, white, stage:Stage I, dead, 67 days	178.7
TCGA-DD-A4NK-01A	80 years, female, white, stage:Stage IIIA, dead, 1210 days	176.5
TCGA-RC-A7S9-01A	47 years, female, asian, stage:Stage I, alive, 640 days	174.9
TCGA-K7-AAU7-01A	61 years, male, white, stage:Stage II, alive, 359 days	172.6
TCGA-DD-A1EK-01A	64 years, female, white, stage:Stage IVB, dead, 558 days	172.6
TCGA-XR-A8TD-01A	49 years, female, white, stage:Stage IIIB, alive, 1030 days	171.3
TCGA-RC-A7SF-01A	66 years, male, asian, stage:Stage I, alive, 579 days	171.3
TCGA-DD-A118-01A	77 years, female, white, stage:Stage II, alive, 3437 days	171.0
TCGA-ED-A97K-01A	54 years, male, asian, stage:Stage IIIA, alive, 6 days	170.2
TCGA-ED-A82E-01A	60 years, female, asian, stage:Stage IIIA, alive, 408 days	170.0
TCGA-G3-A5SJ-01A	59 years, male, white, stage:Stage I, alive, 698 days	167.2
TCGA-DD-A73B-01A	72 years, female, white, stage:Stage I, dead, 283 days	166.5
TCGA-BC-A10R-01A	66 years, female, white, stage:'--, dead, 308 days	166.4
TCGA-DD-AACK-01A	70 years, male, asian, stage:Stage I, alive, 9 days	163.3
TCGA-ED-A66Y-01A	51 years, female, asian, stage:Stage IIIA, dead, 296 days	163.2
TCGA-DD-A73F-01A	77 years, female, white, stage:Stage I, alive, 1085 days	162.6
TCGA-DD-A4NG-01A	77 years, male, white, stage:Stage IIIA, dead, 802 days	162.4
TCGA-UB-AA0U-01A	60 years, male, white, stage:Stage II, alive, 327 days	161.6
TCGA-2Y-A9GX-01A	68 years, male, white, stage:Stage I, alive, 2442 days	160.8
TCGA-G3-A3CH-01A	53 years, male, asian, stage:Stage IIIA, alive, 780 days	158.9
TCGA-CC-A9FS-01A	55 years, male, asian, stage:Stage II, alive, 211 days	158.3
TCGA-DD-AAEI-01A	72 years, male, asian, stage:Stage I, alive, 1531 days	156.4
TCGA-DD-AAVX-01A	38 years, male, asian, stage:Stage II, alive, 1718 days	156.2
TCGA-BC-A10S-01A	81 years, male, white, stage:'--, dead, 1423 days	155.6
TCGA-DD-A11B-01A	73 years, male, white, stage:Stage I, dead, 14 days	154.3
TCGA-FV-A3R3-01A	38 years, female, white, stage:Stage I, dead, 366 days	153.2
TCGA-K7-A5RG-01A	66 years, male, black or african american, stage:Stage I, alive, 519 days	152.6
TCGA-BD-A3ER-01A	62 years, male, white, stage:Stage II, alive, 1115 days	150.5
TCGA-FV-A3I0-01A	76 years, female, white, stage:Stage II, alive, 848 days	149.3
TCGA-ED-A4XI-01A	58 years, male, asian, stage:Stage II, alive, 819 days	147.2
TCGA-2Y-A9HB-01A	66 years, male, stage:Stage I, alive, 260 days	146.0
TCGA-2Y-A9GU-01A	55 years, female, white, stage:Stage I, alive, 1939 days	144.9
TCGA-ED-A627-01A	74 years, male, white, stage:Stage I, alive, 423 days	143.5
TCGA-DD-AAD1-01A	51 years, female, asian, stage:Stage I, alive, 564 days	141.8
TCGA-ZS-A9CF-01A	64 years, male, white, stage:Stage II, alive, 2412 days	141.4
TCGA-DD-A4NI-01A	67 years, male, white, stage:Stage II, alive, 816 days	136.3
TCGA-MR-A8JO-01A	34 years, male, white, stage:Stage I, alive, 330 days	135.8
TCGA-2Y-A9GV-01A	54 years, female, white, stage:Stage I, dead, 2532 days	135.6
TCGA-2Y-A9GZ-01A	82 years, female, white, stage:Stage II, dead, 848 days	134.2
TCGA-DD-AAE2-01A	51 years, male, asian, stage:Stage I, alive, 638 days	132.4
TCGA-DD-A4NB-01A	25 years, male, white, stage:Stage I, alive, 989 days	132.4
TCGA-RC-A6M5-01A	20 years, female, white, stage:Stage IVA, alive, 15 days	131.1
TCGA-BC-A10X-01A	52 years, female, white, stage:Stage IIIA, dead, 770 days	130.7
TCGA-DD-A4NE-01A	75 years, female, white, stage:Stage IIIA, dead, 660 days	130.4
TCGA-LG-A9QD-01A	68 years, male, white, stage:Stage IIIA, alive, 366 days	128.8
TCGA-WX-AA46-01A	61 years, male, white, stage:Stage II, alive, 756 days	127.9
TCGA-G3-A25V-01A	68 years, male, white, stage:Stage I, alive, 860 days	127.0
TCGA-ZP-A9CY-01A	66 years, female, white, stage:'--, alive, 782 days	126.7
TCGA-K7-A5RF-01A	64 years, male, white, stage:Stage I, alive, 631 days	126.7
TCGA-BC-A10Q-01A	72 years, female, white, stage:'--, dead, 1135 days	124.3
TCGA-DD-A1EC-01A	20 years, female, white, stage:Stage I, alive, 602 days	122.8
TCGA-G3-A5SK-01A	58 years, male, white, stage:Stage I, alive, 744 days	121.1
TCGA-DD-A3A4-01A	37 years, male, white, stage:Stage IIIA, dead, 612 days	117.3
TCGA-NI-A4U2-01A	71 years, male, white, stage:Stage IIIA, dead, 1791 days	116.6
TCGA-DD-A4NA-01A	67 years, female, white, stage:Stage IIIC, alive, 1008 days	115.1
TCGA-BC-A10T-01A	76 years, male, white, stage:'--, dead, 837 days	112.8
TCGA-DD-A73A-01A	71 years, male, white, stage:Stage I, alive, 728 days	111.6
TCGA-DD-A73C-01A	65 years, female, white, stage:Stage IIIA, alive, 701 days	111.3
TCGA-DD-A1ED-01A	68 years, male, white, stage:Stage I, alive, 2301 days	110.3
TCGA-5R-AA1D-01A	17 years, female, white, stage:Stage IIIA, alive, 449 days	107.1
TCGA-BC-A110-01A	51 years, female, black or african american, stage:'--, dead, 2116 days	106.9
TCGA-DD-AAE7-01A	72 years, male, asian, stage:Stage I, alive, 644 days	106.5
TCGA-5R-AAAM-01A	65 years, female, white, stage:Stage II, dead, 46 days	106.1
TCGA-UB-AA0V-01A	69 years, female, white, stage:Stage I, alive, 314 days	104.0
TCGA-DD-A4ND-01A	56 years, female, white, stage:Stage I, alive, 2746 days	101.7
TCGA-DD-A3A2-01A	76 years, female, white, stage:Stage I, dead, 2131 days	98.7
TCGA-2Y-A9GT-01A	51 years, male, white, stage:Stage I, dead, 1624 days	98.4
TCGA-DD-A4NL-01A	46 years, male, white, stage:Stage I, alive, 1711 days	95.3
TCGA-G3-A7M8-01A	31 years, male, asian, stage:Stage I, alive, 430 days	91.9
TCGA-MR-A520-01A	58 years, male, white, stage:Stage I, alive, 229 days	79.4
TCGA-G3-A3CI-01A	71 years, male, white, stage:Stage I, alive, 180 days	75.6
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LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter plotⁱ

& Survival analysisⁱ

PSMD4 is not prognostic in Liver Hepatocellular Carcinoma (validation)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 202.83

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average pTPM

276.1

Number of samples

231

Samples

Sample	Description	pTPM
DO50839	47 years, female, NA, stage:3, alive, 330 days	763.4
DO45249	57 years, male, NA, stage:1, alive, 630 days	723.1
DO23521	63 years, male, NA, stage:3, alive, 1110 days	707.1
DO23525	71 years, male, NA, stage:4, alive, 1050 days	671.1
DO50783	62 years, male, NA, stage:3, alive, 480 days	647.1
DO23513	76 years, male, NA, stage:3, alive, 1200 days	643.1
DO48732	73 years, male, NA, stage:3, alive, 630 days	640.0
DO23516	69 years, male, NA, stage:3, dead, 20 days	626.0
DO50791	79 years, female, NA, stage:1, dead, 480 days	609.1
DO45267	73 years, male, NA, stage:3, dead, 570 days	580.3
DO23529	72 years, male, NA, stage:4, alive, 930 days	544.1
DO50811	62 years, male, NA, stage:1, alive, 450 days	536.5
DO48737	52 years, male, NA, stage:1, alive, 720 days	531.7
DO45277	64 years, male, NA, stage:3, alive, 600 days	510.7
DO50829	78 years, male, NA, stage:3, alive, 570 days	493.7
DO45209	70 years, male, NA, stage:4, alive, 1350 days	491.6
DO45163	76 years, male, NA, stage:2, alive, 960 days	486.4
DO23514	64 years, male, NA, stage:2, alive, 1290 days	484.7
DO48672	81 years, male, NA, stage:2, alive, 450 days	478.6
DO50814	83 years, male, NA, stage:3, alive, 420 days	477.0
DO48723	73 years, male, NA, stage:1, alive, 600 days	476.6
DO23539	77 years, male, NA, stage:1, alive, 1110 days	474.9
DO45097	69 years, male, NA, stage:3, alive, 1620 days	469.5
DO45275	65 years, male, NA, stage:3, dead, 10 days	468.6
DO48695	77 years, male, NA, stage:2, alive, 720 days	467.3
DO45185	89 years, male, NA, stage:2, alive, 600 days	465.5
DO45193	68 years, female, NA, stage:4, dead, 120 days	464.4
DO23511	83 years, female, NA, stage:3, dead, 180 days	458.9
DO23526	66 years, male, NA, stage:3, alive, 1050 days	450.0
DO45281	83 years, male, NA, stage:4, alive, 750 days	441.9
DO45092	62 years, male, NA, stage:4, dead, 1200 days	440.0
DO48681	57 years, male, NA, stage:2, alive, 900 days	439.0
DO45171	56 years, male, NA, stage:3, alive, 600 days	436.8
DO48746	76 years, male, NA, stage:3, alive, 570 days	434.3
DO48747	62 years, male, NA, stage:3, alive, 540 days	419.1
DO45301	56 years, male, NA, stage:2, dead, 1440 days	418.5
DO48697	64 years, female, NA, stage:2, dead, 810 days	416.1
DO23508	79 years, female, NA, stage:2, alive, 390 days	411.3
DO45205	67 years, female, NA, stage:2, dead, 90 days	409.9
DO45253	50 years, male, NA, stage:2, alive, 870 days	405.8
DO50799	66 years, female, NA, stage:2, alive, 540 days	402.6
DO45095	66 years, male, NA, stage:2, alive, 1620 days	402.3
DO48719	80 years, male, NA, stage:2, alive, 690 days	396.1
DO23548	78 years, female, NA, stage:1, alive, 840 days	381.5
DO45131	53 years, male, NA, stage:4, dead, 360 days	375.1
DO45155	69 years, male, NA, stage:2, alive, 2160 days	374.7
DO45159	65 years, male, NA, stage:3, alive, 1470 days	373.9
DO45117	73 years, female, NA, stage:2, dead, 1110 days	372.3
DO50825	70 years, male, NA, stage:2, alive, 390 days	371.2
DO23541	65 years, male, NA, stage:2, alive, 930 days	363.9
DO50844	75 years, male, NA, stage:4, alive, 300 days	363.0
DO45219	78 years, male, NA, stage:2, alive, 1080 days	362.7
DO45121	61 years, male, NA, stage:3, alive, 1530 days	362.6
DO48706	72 years, male, NA, stage:2, alive, 870 days	359.0
DO45261	74 years, male, NA, stage:3, alive, 990 days	358.6
DO45199	86 years, female, NA, stage:2, alive, 1350 days	358.1
DO50802	49 years, male, NA, stage:2, alive, 930 days	345.1
DO45133	64 years, male, NA, stage:3, dead, 660 days	342.4
DO45225	69 years, male, NA, stage:1, alive, 1050 days	341.8
DO48751	68 years, male, NA, stage:2, dead, 480 days	340.2
DO23510	80 years, female, NA, stage:2, alive, 870 days	337.8
DO45127	73 years, male, NA, stage:3, dead, 420 days	335.0
DO23528	45 years, female, NA, stage:2, alive, 1020 days	333.9
DO23542	66 years, male, NA, stage:3, alive, 960 days	333.4
DO48704	68 years, female, NA, stage:3, alive, 750 days	331.7
DO45115	81 years, male, NA, stage:2, alive, 840 days	330.7
DO23536	56 years, male, NA, stage:2, alive, 930 days	329.5
DO45263	67 years, male, NA, stage:3, dead, 270 days	329.0
DO45129	61 years, male, NA, stage:3, alive, 1470 days	322.0
DO48677	58 years, male, NA, stage:3, alive, 1140 days	317.1
DO23515	71 years, male, NA, stage:2, alive, 1230 days	316.7
DO50806	70 years, male, NA, stage:4, alive, 540 days	315.2
DO23543	63 years, male, NA, stage:2, alive, 1020 days	311.2
DO23509	60 years, male, NA, stage:3, dead, 780 days	310.9
DO48741	64 years, male, NA, stage:3, alive, 240 days	307.6
DO48679	72 years, male, NA, stage:2, alive, 1200 days	306.4
DO45257	46 years, male, NA, stage:3, alive, 810 days	305.6
DO50857	72 years, male, NA, stage:2, alive, 210 days	305.0
DO23519	65 years, male, NA, stage:3, alive, 630 days	304.7
DO45307	54 years, female, NA, stage:4, dead, 240 days	304.5
DO50798	77 years, male, NA, stage:3, dead, 30 days	302.2
DO45237	58 years, male, NA, stage:2, alive, 900 days	298.8
DO45119	74 years, male, NA, stage:3, dead, 510 days	297.2
DO48701	78 years, male, NA, stage:2, alive, 780 days	296.3
DO45299	70 years, female, NA, stage:1, alive, 1440 days	295.4
DO48757	68 years, female, NA, stage:3, alive, 480 days	292.4
DO48682	72 years, female, NA, stage:3, dead, 120 days	291.4
DO23533	61 years, male, NA, stage:2, alive, 900 days	291.3
DO45145	78 years, male, NA, stage:3, dead, 60 days	290.8
DO48736	76 years, female, NA, stage:1, alive, 600 days	288.7
DO50859	77 years, male, NA, stage:2, alive, 180 days	282.5
DO45227	57 years, female, NA, stage:2, alive, 1020 days	280.4
DO45187	32 years, female, NA, stage:1, alive, 1260 days	278.8
DO23524	71 years, female, NA, stage:2, alive, 1050 days	278.5
DO45221	75 years, female, NA, stage:4, dead, 390 days	277.0
DO23549	74 years, male, NA, stage:3, alive, 990 days	275.1
DO23534	60 years, male, NA, stage:2, alive, 840 days	272.5
DO45241	49 years, male, NA, stage:1, alive, 1080 days	272.5
DO45175	74 years, male, NA, stage:2, alive, 1140 days	270.8
DO45139	63 years, male, NA, stage:3, alive, 1320 days	267.7
DO50818	65 years, male, NA, stage:2, alive, 510 days	262.5
DO48759	73 years, male, NA, stage:3, alive, 720 days	259.2
DO45149	70 years, female, NA, stage:2, alive, 1260 days	258.7
DO50822	66 years, male, NA, stage:2, alive, 510 days	257.5
DO45213	58 years, male, NA, stage:1, alive, 1200 days	256.9
DO45273	62 years, male, NA, stage:2, alive, 480 days	256.5
DO50776	75 years, male, NA, stage:1, alive, 690 days	253.2
DO45259	65 years, male, NA, stage:3, alive, 330 days	251.5
DO45137	38 years, male, NA, stage:1, alive, 1320 days	251.4
DO45103	47 years, male, NA, stage:3, alive, 450 days	250.8
DO23545	67 years, male, NA, stage:2, dead, 570 days	250.0
DO48733	72 years, male, NA, stage:2, alive, 600 days	249.9
DO50855	47 years, male, NA, stage:2, alive, 570 days	248.6
DO45179	78 years, female, NA, stage:2, alive, 600 days	248.0
DO45173	63 years, male, NA, stage:3, alive, 1170 days	246.7
DO45287	74 years, male, NA, stage:1, alive, 390 days	245.7
DO23512	60 years, male, NA, stage:1, alive, 1260 days	242.7
DO50817	75 years, male, NA, stage:2, alive, 390 days	242.1
DO45297	61 years, female, NA, stage:4, dead, 1260 days	241.8
DO50805	72 years, male, NA, stage:2, alive, 690 days	240.9
DO50809	56 years, male, NA, stage:3, dead, 720 days	240.3
DO50804	81 years, male, NA, stage:2, alive, 720 days	240.1
DO45203	71 years, female, NA, stage:2, alive, 1170 days	239.3
DO45189	85 years, female, NA, stage:2, alive, 1200 days	238.7
DO45235	68 years, female, NA, stage:1, alive, 900 days	238.1
DO48700	78 years, female, NA, stage:2, alive, 810 days	237.8
DO45243	74 years, female, NA, stage:3, alive, 930 days	234.8
DO50793	76 years, male, NA, stage:4, alive, 540 days	233.8
DO50820	77 years, female, NA, stage:3, alive, 510 days	232.4
DO45183	72 years, female, NA, stage:2, dead, 570 days	231.7
DO48717	54 years, male, NA, stage:4, dead, 180 days	230.7
DO45165	75 years, male, NA, stage:2, alive, 690 days	228.9
DO50808	68 years, male, NA, stage:2, alive, 570 days	228.5
DO23518	67 years, male, NA, stage:2, alive, 1320 days	227.3
DO48693	71 years, male, NA, stage:2, alive, 900 days	226.9
DO45096	69 years, male, NA, stage:2, dead, 1290 days	224.2
DO45123	78 years, female, NA, stage:2, dead, 570 days	223.0
DO23546	63 years, male, NA, stage:2, alive, 1050 days	221.2
DO45279	67 years, male, NA, stage:3, alive, 1290 days	221.1
DO50785	37 years, male, NA, stage:4, dead, 90 days	218.5
DO45099	46 years, male, NA, stage:3, alive, 1590 days	214.4
DO45161	74 years, male, NA, stage:2, dead, 540 days	213.9
DO50832	73 years, male, NA, stage:3, alive, 90 days	213.2
DO23540	73 years, male, NA, stage:1, alive, 750 days	208.6
DO45207	68 years, male, NA, stage:1, alive, 1050 days	208.0
DO48725	66 years, male, NA, stage:1, alive, 780 days	207.3
DO45265	73 years, male, NA, stage:3, alive, 1020 days	206.8
DO45153	77 years, female, NA, stage:2, alive, 1380 days	206.6
DO45091	56 years, male, NA, stage:2, dead, 1320 days	206.5
DO227801	77 years, female, NA, stage:1, alive, 660 days	205.8
DO45251	57 years, female, NA, stage:2, alive, 900 days	204.5
DO50778	60 years, male, NA, stage:4, alive, 630 days	203.6
DO23537	79 years, male, NA, stage:2, dead, 900 days	202.9
DO45217	69 years, female, NA, stage:3, dead, 270 days	202.8
DO48743	69 years, female, NA, stage:2, alive, 570 days	202.5
DO50800	74 years, male, NA, stage:2, alive, 510 days	201.9
DO23547	74 years, male, NA, stage:1, alive, 1020 days	201.8
DO45285	59 years, male, NA, stage:3, alive, 480 days	198.7
DO45113	58 years, male, NA, stage:3, alive, 1560 days	197.2
DO50816	63 years, male, NA, stage:2, alive, 390 days	196.5
DO45141	73 years, male, NA, stage:2, alive, 1320 days	195.5
DO23527	72 years, male, NA, stage:1, alive, 1050 days	195.0
DO45255	81 years, male, NA, stage:3, alive, 720 days	194.2
DO45125	58 years, male, NA, stage:3, alive, 1680 days	193.4
DO50845	72 years, male, NA, stage:3, alive, 210 days	192.6
DO50840	49 years, male, NA, stage:2, alive, 330 days	189.5
DO45157	62 years, male, NA, stage:2, alive, 1980 days	185.3
DO45289	78 years, female, NA, stage:3, alive, 360 days	183.0
DO45094	76 years, male, NA, stage:3, alive, 1650 days	182.4
DO50813	56 years, male, NA, stage:2, alive, 420 days	181.2
DO45169	74 years, male, NA, stage:3, alive, 1350 days	178.9
DO48715	58 years, female, NA, stage:2, dead, 690 days	177.4
DO45245	75 years, female, NA, stage:2, dead, 240 days	177.0
DO45283	60 years, male, NA, stage:3, alive, 510 days	176.9
DO45269	59 years, male, NA, stage:3, alive, 750 days	175.6
DO45177	81 years, female, NA, stage:3, alive, 1260 days	175.4
DO50850	74 years, male, NA, stage:3, alive, 720 days	174.5
DO45211	76 years, male, NA, stage:3, alive, 240 days	174.1
DO45229	74 years, male, NA, stage:1, alive, 990 days	173.9
DO45231	84 years, male, NA, stage:2, alive, 930 days	173.5
DO23532	71 years, female, NA, stage:1, alive, 960 days	172.0
DO50787	63 years, male, NA, stage:3, alive, 480 days	168.7
DO23523	52 years, male, NA, stage:3, alive, 1080 days	168.1
DO23552	80 years, female, NA, stage:1, alive, 810 days	167.8
DO50815	62 years, male, NA, stage:3, alive, 150 days	165.5
DO45239	42 years, male, NA, stage:2, alive, 870 days	164.0
DO48712	50 years, male, NA, stage:2, alive, 810 days	159.1
DO45305	66 years, male, NA, stage:4, alive, 300 days	156.3
DO48716	71 years, male, NA, stage:2, alive, 720 days	155.4
DO48730	73 years, female, NA, stage:2, alive, 630 days	154.7
DO45247	31 years, female, NA, stage:2, alive, 210 days	154.5
DO45135	77 years, male, NA, stage:1, alive, 1410 days	153.5
DO48720	62 years, female, NA, stage:2, alive, 570 days	151.5
DO227643	79 years, male, NA, stage:2, alive, 1260 days	150.4
DO45107	63 years, female, NA, stage:2, alive, 1710 days	148.5
DO45093	71 years, male, NA, stage:2, dead, 720 days	148.4
DO23535	67 years, male, NA, stage:1, alive, 960 days	142.1
DO45197	51 years, male, NA, stage:2, alive, 1170 days	140.2
DO45303	62 years, female, NA, stage:3, alive, 990 days	139.4
DO48728	74 years, female, NA, stage:2, alive, 150 days	138.9
DO23530	53 years, male, NA, stage:4, dead, 180 days	138.7
DO50807	67 years, male, NA, stage:1, alive, 540 days	138.2
DO45223	67 years, male, NA, stage:4, alive, 1020 days	136.4
DO45105	61 years, male, NA, stage:1, alive, 1680 days	135.5
DO50789	73 years, female, NA, stage:2, alive, 570 days	135.1
DO23538	67 years, male, NA, stage:2, alive, 450 days	134.3
DO50803	62 years, female, NA, stage:1, alive, 540 days	133.8
DO45143	69 years, male, NA, stage:3, alive, 1290 days	130.9
DO45111	74 years, male, NA, stage:2, alive, 1590 days	128.5
DO50819	72 years, female, NA, stage:2, alive, 510 days	125.9
DO48742	76 years, male, NA, stage:2, alive, 600 days	125.5
DO48721	58 years, female, NA, stage:1, alive, 900 days	120.7
DO45201	49 years, male, NA, stage:1, alive, 900 days	117.1
DO48727	81 years, female, NA, stage:2, dead, 390 days	112.5
DO45109	63 years, male, NA, stage:2, alive, 1590 days	109.5
DO45101	63 years, male, NA, stage:2, alive, 1680 days	109.0
DO45191	61 years, female, NA, stage:2, alive, 1200 days	102.9
DO50774	68 years, female, NA, stage:2, alive, 720 days	102.3
DO48761	55 years, male, NA, stage:2, alive, 870 days	100.3
DO45181	84 years, female, NA, stage:2, alive, 1200 days	99.9
DO45215	65 years, male, NA, stage:2, alive, 1170 days	99.8
DO23550	69 years, male, NA, stage:1, alive, 990 days	97.1
DO45233	83 years, male, NA, stage:3, alive, 900 days	94.3
DO23531	78 years, female, NA, stage:3, alive, 900 days	87.1
DO48760	70 years, female, NA, stage:2, alive, 690 days	86.7
DO48674	80 years, male, NA, stage:2, alive, 1260 days	85.5
DO23544	67 years, male, NA, stage:2, alive, 960 days	85.2
DO45167	67 years, male, NA, stage:2, dead, 1440 days	76.2
DO23551	73 years, male, NA, stage:3, dead, 150 days	74.9
DO45195	62 years, male, NA, stage:1, alive, 390 days	69.4
DO23517	62 years, male, NA, stage:2, alive, 1200 days	61.8
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LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)

Number of samples

330

Samples

Sample ID	Sample type	nRPX
533	Tumor	0.6
473	Tumor	0.4
1021	Tumor	0.4
777	Tumor	0.4
477	Tumor	0.4
1027	Tumor	0.4
257	Tumor	0.4
953	Tumor	0.4
955	Tumor	0.4
755	Tumor	0.4
741	Tumor	0.4
925	Tumor	0.3
525	Tumor	0.3
123	Tumor	0.3
977	Tumor	0.3
482	Normal	0.3
1026	Normal	0.3
327	Tumor	0.3
513	Tumor	0.3
411	Tumor	0.3
355	Tumor	0.3
924	Normal	0.2
951	Tumor	0.2
472	Normal	0.2
1025	Tumor	0.2
981	Tumor	0.2
861	Tumor	0.2
435	Tumor	0.2
515	Tumor	0.2
451	Tumor	0.2
915	Tumor	0.2
351	Tumor	0.2
911	Tumor	0.2
147	Tumor	0.2
484	Normal	0.2
313	Tumor	0.2
1022	Normal	0.2
567	Tumor	0.2
487	Tumor	0.2
952	Normal	0.2
554	Normal	0.2
695	Tumor	0.2
697	Tumor	0.2
452	Normal	0.2
415	Tumor	0.2
698	Normal	0.2
171	Tumor	0.2
1028	Normal	0.2
743	Tumor	0.2
956	Normal	0.2
481	Tumor	0.2
267	Tumor	0.2
1041	Tumor	0.2
231	Tumor	0.2
131	Tumor	0.2
1031	Tumor	0.1
537	Tumor	0.1
436	Normal	0.1
957	Tumor	0.1
918	Normal	0.1
518	Normal	0.1
462	Normal	0.1
128	Normal	0.1
715	Tumor	0.1
926	Normal	0.1
516	Normal	0.1
141	Tumor	0.1
1013	Tumor	0.1
423	Tumor	0.1
271	Tumor	0.1
937	Tumor	0.1
745	Tumor	0.1
353	Tumor	0.1
456	Normal	0.1
527	Tumor	0.1
387	Tumor	0.1
261	Tumor	0.1
685	Tumor	0.1
553	Tumor	0.1
756	Normal	0.1
965	Tumor	0.1
471	Tumor	0.1
416	Normal	0.1
817	Tumor	0.1
357	Tumor	0.1
221	Tumor	0.1
132	Normal	0.1
923	Tumor	0.1
137	Tumor	0.1
1046	Normal	0.1
857	Tumor	0.1
412	Normal	0.1
425	Tumor	0.1
1015	Tumor	0.1
514	Normal	0.1
356	Normal	0.1
546	Normal	0.1
426	Normal	0.1
466	Normal	0.1
963	Tumor	0.1
497	Tumor	0.1
474	Normal	0.1
867	Tumor	0.1
422	Normal	0.1
494	Normal	0.1
557	Tumor	0.1
944	Normal	0.1
958	Normal	0.1
696	Normal	0.1
427	Tumor	0.1
364	Normal	0.1
1043	Tumor	0.1
161	Tumor	0.1
478	Normal	0.1
262	Normal	0.1
1042	Normal	0.1
448	Normal	0.1
922	Normal	0.1
443	Tumor	0.1
465	Tumor	0.1
258	Normal	0.1
966	Normal	0.1
136	Normal	0.1
464	Normal	0.1
114	Normal	0.1
468	Normal	0.1
964	Normal	0.1
914	Normal	0.1
724	Normal	0.1
534	Normal	0.1
728	Normal	0.1
455	Tumor	0.0
492	Normal	0.0
212	Normal	0.0
228	Normal	0.0
431	Tumor	0.0
222	Normal	0.0
111	Normal	0.0
882	Normal	0.0
921	Tumor	0.0
727	Tumor	0.0
428	Normal	0.0
746	Normal	0.0
1032	Normal	0.0
491	Tumor	0.0
432	Normal	0.0
938	Normal	0.0
414	Normal	0.0
386	Normal	0.0
125	Tumor	0.0
272	Normal	0.0
112	Tumor	0.0
1045	Tumor	0.0
424	Normal	0.0
517	Tumor	0.0
362	Normal	0.0
858	Normal	0.0
328	Normal	0.0
227	Tumor	0.0
864	Normal	0.0
445	Tumor	0.0
298	Normal	0.0
361	Tumor	0.0
528	Normal	0.0
461	Tumor	0.0
186	Normal	0.0
884	Normal	0.0
196	Normal	0.0
647	Tumor	0.0
738	Normal	0.0
297	Tumor	0.0
571	Tumor	0.0
195	Tumor	0.0
214	Normal	0.0
778	Normal	0.0
493	Tumor	0.0
526	Normal	0.0
113	Tumor	0.0
218	Normal	0.0
873	Tumor	0.0
863	Tumor	0.0
421	Tumor	0.0
714	Normal	0.0
523	Tumor	0.0
483	Tumor	0.0
617	Tumor	0.0
145	Tumor	0.0
983	Tumor	0.0
172	Normal	0.0
713	Tumor	0.0
393	Tumor	0.0
967	Tumor	0.0
188	Normal	0.0
138	Normal	0.0
365	Tumor	0.0
968	Normal	0.0
446	Normal	0.0
913	Tumor	0.0
391	Tumor	0.0
978	Normal	0.0
148	Normal	0.0
982	Normal	0.0
277	Tumor	0.0
376	Normal	0.0
943	Tumor	0.0
392	Normal	0.0
278	Normal	0.0
862	Normal	0.0
723	Tumor	0.0
538	Normal	0.0
916	Normal	0.0
1016	Normal	0.0
366	Normal	0.0
662	Normal	0.0
191	Tumor	0.0
358	Normal	0.0
284	Normal	0.0
286	Normal	0.0
232	Normal	0.0
785	Tumor	0.0
142	Normal	0.0
162	Normal	0.0
663	Tumor	0.0
954	Normal	0.0
268	Normal	0.0
865	Tumor	0.0
488	Normal	-0.1
558	Normal	-0.1
434	Normal	-0.1
564	Normal	-0.1
185	Tumor	-0.1
394	Normal	-0.1
878	Normal	-0.1
285	Tumor	-0.1
126	Normal	-0.1
912	Normal	-0.1
368	Normal	-0.1
866	Normal	-0.1
648	Normal	-0.1
463	Tumor	-0.1
312	Normal	-0.1
976	Normal	-0.1
661	Tumor	-0.1
217	Tumor	-0.1
975	Tumor	-0.1
396	Normal	-0.1
572	Normal	-0.1
433	Tumor	-0.1
223	Tumor	-0.1
187	Tumor	-0.1
851	Tumor	-0.1
868	Normal	-0.1
211	Tumor	-0.1
384	Normal	-0.1
573	Tumor	-0.1
1044	Normal	-0.1
816	Normal	-0.1
874	Normal	-0.1
146	Normal	-0.1
213	Tumor	-0.1
1014	Normal	-0.1
721	Tumor	-0.1
545	Tumor	-0.1
823	Tumor	-0.1
665	Tumor	-0.1
742	Normal	-0.1
615	Tumor	-0.1
124	Normal	-0.1
192	Normal	-0.1
664	Normal	-0.1
563	Tumor	-0.1
224	Normal	-0.1
786	Normal	-0.1
852	Normal	-0.1
881	Tumor	-0.1
642	Normal	-0.1
375	Tumor	-0.1
413	Tumor	-0.1
388	Normal	-0.1
627	Tumor	-0.1
342	Normal	-0.1
135	Tumor	-0.1
383	Tumor	-0.1
568	Normal	-0.1
127	Tumor	-0.1
686	Normal	-0.1
341	Tumor	-0.1
618	Normal	-0.1
447	Tumor	-0.1
722	Normal	-0.1
314	Normal	-0.1
716	Normal	-0.2
616	Normal	-0.2
536	Normal	-0.2
395	Tumor	-0.2
524	Normal	-0.2
883	Tumor	-0.2
385	Tumor	-0.2
367	Tumor	-0.2
877	Tumor	-0.2
824	Normal	-0.2
744	Normal	-0.2
498	Normal	-0.2
283	Tumor	-0.2
363	Tumor	-0.2
737	Tumor	-0.2
818	Normal	-0.2
672	Normal	-0.2
628	Normal	-0.2
311	Tumor	-0.2
343	Tumor	-0.2
535	Tumor	-0.2
917	Tumor	-0.2
984	Normal	-0.2
444	Normal	-0.2
331	Tumor	-0.2
574	Normal	-0.2
344	Normal	-0.2
815	Tumor	-0.2
666	Normal	-0.2
467	Tumor	-0.2
814	Normal	-0.2
813	Tumor	-0.2
354	Normal	-0.3
671	Tumor	-0.3
636	Normal	-0.3
332	Normal	-0.3
641	Tumor	-0.3
352	Normal	-0.3
635	Tumor	-0.4
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LIVER CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.	Antibody HPA038807	Antibody HPA039252	Antibody CAB047300
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Cholangiocarcinoma
Carcinoma, Hepatocellular, NOS