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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:129.8 nTPM
HPA Brain:96.1 nTPM
GTEx:129.8 nTPM
FANTOM5:49.6 Scaled Tags Per Million
Pig:102.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 93.7
1981 Female, age 72, midline 107.3
2194 Female, age 79, both hemispheres 102.6
2565 Male, age 75, midline 92.0
2816 Male, age 47, midline 83.9
2048 Male, age 55, midline 82.6
Cervical spinal cord, dorsal horn
nTPM: 86.7
2173 Female, age 72, unknown 118.2
2069 Male, age 47, both hemispheres 89.7
2296 Male, age 66, both hemispheres 88.9
2297 Male, age 75, both hemispheres 76.3
2721 Male, age 90, both hemispheres 75.2
1877 Male, age 55, unknown 71.9
Cervical spinal cord, ventral horn
nTPM: 96.1
2480 Male, age 75, both hemispheres 112.2
2068 Male, age 55, unknown 100.4
2809 Male, age 90, both hemispheres 98.1
2820 Female, age 79, both hemispheres 90.3
2098 Female, age 72, unknown 89.9
2295 Male, age 66, both hemispheres 85.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 129.8
Samples: 159

Max nTPM: 226.5
Min nTPM: 72.6
Std nTPM: 27.6
Median nTPM: 125.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 226.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 205.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 200.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 191.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 184.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 182.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 179.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 178.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 177.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 176.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 175.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 175.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 175.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 173.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 172.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 172.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 170.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 167.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 164.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 164.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 161.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 159.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 159.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 158.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 158.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 158.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 157.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 157.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 154.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 153.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 153.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 153.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 153.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 152.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 152.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 151.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 151.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 149.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 146.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 146.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 145.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 145.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 145.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 144.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 143.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 143.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 141.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 141.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 141.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 140.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 140.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 138.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 138.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 138.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 137.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 136.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 135.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 135.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 134.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 134.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 133.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 133.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 132.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 131.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 131.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 131.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 131.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 131.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 130.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 130.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 129.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 129.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 129.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 128.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 128.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 127.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 127.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 126.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 126.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 125.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 124.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 124.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 124.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 124.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 123.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 123.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 123.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 123.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 123.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 123.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 122.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 122.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 121.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 121.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 120.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 119.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 119.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 119.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 118.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 118.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 118.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 118.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 117.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 117.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 117.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 117.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 115.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 114.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 114.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 114.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 113.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 113.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 112.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 112.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 111.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 111.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 111.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 111.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 110.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 109.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 109.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 108.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 108.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 108.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 108.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 107.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 107.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 107.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 107.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 106.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 104.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 104.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 104.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 104.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 103.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 103.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 102.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 101.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 101.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 100.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 99.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 98.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 97.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 96.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 96.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 95.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 95.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 95.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 94.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 94.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 89.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 86.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 86.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 85.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 83.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 80.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 78.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 76.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 72.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

49.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 49.6
FF:10159-103A6 76 years, female 51.8
FF:10181-103D1 60 years, female 47.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 95.2
Samples: 4

Max nTPM: 103.6
Min nTPM: 86.8
Sample A Female 98.3
Sample B Female 86.8
Sample C Male 91.9
Sample D Male 103.6
Ventral spinal cord
nTPM: 102.0
Samples: 4

Max nTPM: 106.6
Min nTPM: 94.2
Sample A Female 94.2
Sample B Female 105.9
Sample C Male 106.6
Sample D Male 101.3

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