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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:175.5 nTPM
HPA Brain:116.6 nTPM
GTEx:175.5 nTPM
FANTOM5:91.0 Scaled Tags Per Million
Pig:125.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 101.9
1981 Female, age 72, midline 141.6
2565 Male, age 75, midline 99.3
2194 Female, age 79, both hemispheres 97.1
2816 Male, age 47, midline 89.1
2048 Male, age 55, midline 82.3
Cervical spinal cord, dorsal horn
nTPM: 115.9
2173 Female, age 72, unknown 154.7
2296 Male, age 66, both hemispheres 139.2
2069 Male, age 47, both hemispheres 136.8
1877 Male, age 55, unknown 101.8
2297 Male, age 75, both hemispheres 91.6
2721 Male, age 90, both hemispheres 71.4
Cervical spinal cord, ventral horn
nTPM: 116.6
2098 Female, age 72, unknown 155.1
2809 Male, age 90, both hemispheres 138.5
2480 Male, age 75, both hemispheres 129.4
2295 Male, age 66, both hemispheres 101.5
2068 Male, age 55, unknown 100.9
2820 Female, age 79, both hemispheres 74.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 175.5
Samples: 159

Max nTPM: 264.1
Min nTPM: 106.2
Std nTPM: 30.4
Median nTPM: 173.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 264.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 254.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 253.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 250.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 246.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 236.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 234.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 234.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 232.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 232.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 231.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 228.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 224.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 223.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 223.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 222.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 219.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 218.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 210.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 210.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 209.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 208.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 206.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 205.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 204.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 202.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 201.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 200.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 199.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 199.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 199.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 198.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 198.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 196.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 196.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 196.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 196.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 196.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 195.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 195.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 195.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 193.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 193.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 192.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 192.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 191.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 190.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 189.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 189.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 188.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 187.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 187.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 186.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 184.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 184.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 183.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 183.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 183.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 182.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 181.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 181.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 180.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 180.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 179.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 179.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 178.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 178.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 178.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 177.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 176.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 176.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 175.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 175.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 174.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 174.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 174.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 174.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 174.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 173.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 173.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 171.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 170.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 170.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 169.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 169.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 168.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 168.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 167.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 167.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 167.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 166.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 166.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 164.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 164.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 164.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 164.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 163.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 163.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 162.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 162.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 161.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 161.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 161.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 161.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 161.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 160.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 159.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 158.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 158.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 158.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 158.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 157.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 156.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 155.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 155.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 155.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 154.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 153.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 153.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 152.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 151.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 151.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 151.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 150.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 150.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 150.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 149.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 149.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 148.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 147.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 147.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 146.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 146.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 146.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 145.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 145.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 143.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 143.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 143.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 142.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 142.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 140.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 140.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 139.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 138.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 138.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 138.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 137.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 136.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 133.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 131.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 131.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 131.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 127.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 127.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 126.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 125.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 113.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 106.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 91.0
FF:10181-103D1 60 years, female 124.8
FF:10159-103A6 76 years, female 57.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 111.8
Samples: 4

Max nTPM: 133.4
Min nTPM: 99.8
Sample A Female 111.0
Sample B Female 103.1
Sample C Male 133.4
Sample D Male 99.8
Ventral spinal cord
nTPM: 125.5
Samples: 4

Max nTPM: 137.0
Min nTPM: 114.1
Sample A Female 114.1
Sample B Female 137.0
Sample C Male 130.7
Sample D Male 120.1

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