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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:221.4 nTPM
HPA:55.2 nTPM
GTEx:221.4 nTPM
FANTOM5:230.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001251Antibody HPA001551
Glandular cells Not detectedLow


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.2
overview
Male, age 65
Small intestine sample 232
nTPM: 29.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 46.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 77
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 67.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

221.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 221.4
Samples: 187

Max nTPM: 882.3
Min nTPM: 44.3
Std nTPM: 128.2
Median nTPM: 197.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 882.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 647.1
GTEX-1192X-2526-SM-59868 50-59 years, male 577.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 562.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 538.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 536.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 524.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 518.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 502.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 487.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 481.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 472.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 465.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 452.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 438.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 421.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 402.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 399.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 389.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 387.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 379.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 376.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 373.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 349.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 335.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 332.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 326.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 325.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 319.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 314.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 311.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 311.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 308.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 306.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 301.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 298.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 298.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 293.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 292.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 291.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 287.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 284.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 282.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 280.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 279.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 279.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 276.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 274.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 273.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 273.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 272.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 272.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 270.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 268.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 262.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 261.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 260.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 255.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 254.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 249.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 244.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 241.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 240.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 239.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 235.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 234.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 233.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 232.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 230.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 230.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 230.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 230.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 229.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 228.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 228.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 228.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 228.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 225.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 222.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 220.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 219.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 218.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 215.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 214.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 212.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 212.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 211.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 209.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 209.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 208.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 207.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 203.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 201.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 197.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 196.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 194.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 194.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 193.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 193.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 192.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 190.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 186.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 184.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 182.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 182.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 181.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 180.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 179.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 177.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 176.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 174.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 172.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 172.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 166.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 166.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 164.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 164.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 158.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 154.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 154.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 154.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 153.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 149.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 146.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 146.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 145.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 143.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 143.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 139.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 137.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 134.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 133.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 133.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 133.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 132.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 132.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 131.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 130.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 128.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 128.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 126.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 126.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 125.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 123.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 121.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 119.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 118.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 114.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 114.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 114.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 110.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 108.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 104.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 102.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 102.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 101.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 100.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 100.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 100.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 99.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 99.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 98.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 97.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 97.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 94.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 94.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 93.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 92.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 90.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 88.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 87.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 87.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 86.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 82.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 82.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 81.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 79.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 78.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 76.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 75.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 75.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 73.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 70.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 70.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 65.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 60.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 44.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

230.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 230.6
FF:10024-101D6 15,40,85 years, mixed 230.6

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