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  • ATP6V0D1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:75.9 nTPM
HPA Brain:109.3 nTPM
GTEx:75.9 nTPM
FANTOM5:91.2 Scaled Tags Per Million
Pig:180.1 nTPM
Mouse:317.5 nTPM
Allen mouse:23.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.3
Sample id Sample description nTPM
Amygdala
nTPM: 100.2
2814 Male, age 76, right hemisphere 129.0
1987 Female, age 91, left hemisphere 113.2
2517 Female, age 94, left hemisphere 93.4
2514 Male, age 75, right hemisphere 92.7
2695 Female, age 67, right hemisphere 72.5
Basal amygdala
nTPM: 105.4
2243 Female, age 91, right hemisphere 132.1
2685 Female, age 94, left hemisphere 125.9
2110 Male, age 80, left hemisphere 120.2
1955 Male, age 76, both hemispheres 106.5
2609 Male, age 75, right hemisphere 82.8
2827 Female, age 67, right hemisphere 64.9
Central amygdala
nTPM: 109.3
1905 Male, age 76, both hemispheres 129.1
2239 Male, age 80, left hemisphere 121.3
2701 Female, age 91, right hemisphere 111.7
2826 Female, age 94, left hemisphere 101.0
2515 Male, age 75, right hemisphere 83.2
Corticomedial amygdala
nTPM: 102.8
2829 Male, age 80, left hemisphere 131.4
2242 Female, age 91, right hemisphere 121.0
2429 Female, age 94, left hemisphere 105.5
2240 Male, age 76, both hemispheres 91.2
2428 Male, age 75, right hemisphere 89.6
2535 Female, age 67, right hemisphere 78.1
Lateral amygdala
nTPM: 99.8
1883 Male, age 76, both hemispheres 133.7
2534 Female, age 94, left hemisphere 126.6
2255 Female, age 91, right hemisphere 104.4
2256 Male, age 80, left hemisphere 93.1
2516 Male, age 75, right hemisphere 81.3
2830 Female, age 67, right hemisphere 60.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 75.9
Samples: 152

Max nTPM: 198.2
Min nTPM: 37.3
Std nTPM: 26.4
Median nTPM: 68.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 198.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 156.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 150.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 137.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 137.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 129.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 125.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 124.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 123.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 123.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 121.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 121.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 120.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 117.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 116.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 116.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 115.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 110.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 110.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 107.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 104.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 103.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 102.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 99.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 98.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 98.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 98.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 97.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 96.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 95.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 94.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 93.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 93.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 93.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 93.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 92.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 91.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 91.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 90.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 90.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 87.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 87.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 86.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 84.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 83.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 83.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 83.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 82.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 80.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 80.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 80.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 79.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 78.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 78.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 78.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 77.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 77.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 76.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 76.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 75.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 75.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 74.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 74.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 73.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 73.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 72.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 72.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 71.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 71.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 70.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 70.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 70.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 70.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 69.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 69.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 68.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 68.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 67.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 67.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 67.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 67.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 66.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 66.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 66.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 66.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 66.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 65.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 65.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 64.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 64.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 63.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 63.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 63.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 63.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 63.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 62.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 62.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 61.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 61.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 61.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 61.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 60.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 60.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 60.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 59.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 59.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 59.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 58.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 58.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 58.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 58.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 58.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 57.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 57.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 56.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 56.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 56.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 55.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 55.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 55.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 55.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 54.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 54.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 54.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 53.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 52.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 52.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 52.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 52.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 52.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 52.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 52.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 51.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 51.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 51.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 50.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 50.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 50.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 48.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 46.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 46.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 45.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 45.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 44.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 44.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 43.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 43.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 43.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 43.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 41.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 41.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 37.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 91.2
FF:10151-102I7 76 years, female 91.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

180.1
Pig sample Sample description nTPM
Amygdala
nTPM: 180.1
Samples: 4

Max nTPM: 253.6
Min nTPM: 133.3
Sample A Female 253.6
Sample B Female 133.3
Sample C Male 157.0
Sample D Male 176.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

317.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 317.6
Samples: 4

Max nTPM: 327.2
Min nTPM: 307.8
Sample A Male 325.3
Sample B Male 327.2
Sample C Female 307.8
Sample D Female 309.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

23.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.3
564647 Antisense, RP_040826_01_B03, Mouse strain C57BL/6J (56 days, male) 23.3

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