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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:144.4 nTPM
HPA:30.3 nTPM
GTEx:144.4 nTPM
FANTOM5:271.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004835Antibody HPA073497Antibody CAB009321Antibody CAB075747
Glandular cells Not detectedNot detectedMediumNot detected









SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.3
overview
Male, age 65
Small intestine sample 232
nTPM: 24
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 29.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 37.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 30.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 144.4
Samples: 187

Max nTPM: 558.5
Min nTPM: 66.9
Std nTPM: 81.0
Median nTPM: 116.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 558.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 502.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 458.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 411.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 399.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 354.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 347.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 332.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 332.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 318.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 314.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 304.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 302.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 296.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 293.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 286.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 258.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 258.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 257.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 253.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 248.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 246.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 242.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 228.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 217.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 212.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 210.4
GTEX-1192X-2526-SM-59868 50-59 years, male 208.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 197.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 196.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 192.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 190.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 189.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 188.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 177.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 174.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 170.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 167.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 167.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 160.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 158.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 157.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 156.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 153.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 149.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 149.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 146.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 146.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 145.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 145.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 145.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 144.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 143.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 142.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 140.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 139.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 139.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 138.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 135.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 134.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 133.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 133.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 132.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 131.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 131.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 131.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 131.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 129.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 129.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 129.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 127.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 127.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 126.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 125.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 125.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 125.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 125.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 124.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 124.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 123.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 123.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 121.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 121.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 121.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 121.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 119.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 118.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 118.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 117.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 117.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 117.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 117.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 116.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 116.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 116.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 115.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 115.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 115.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 114.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 114.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 114.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 113.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 113.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 113.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 112.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 111.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 110.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 110.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 110.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 110.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 109.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 108.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 108.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 108.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 107.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 107.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 107.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 106.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 106.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 106.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 106.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 106.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 106.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 105.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 105.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 105.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 104.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 104.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 104.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 103.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 101.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 101.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 100.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 99.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 99.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 98.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 97.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 97.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 97.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 97.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 97.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 96.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 96.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 96.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 94.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 94.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 93.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 93.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 93.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 93.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 93.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 92.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 92.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 92.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 92.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 92.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 91.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 91.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 90.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 90.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 90.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 90.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 90.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 89.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 89.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 89.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 89.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 88.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 87.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 87.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 87.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 84.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 84.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 84.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 82.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 81.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 80.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 80.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 77.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 77.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 77.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 77.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 75.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 74.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 73.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 67.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 66.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

271.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 271.7
FF:10024-101D6 15,40,85 years, mixed 271.7

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