MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.6 nTPM
HPA Brain:97.0 nTPM
GTEx:22.6 nTPM
FANTOM5:28.4 Scaled Tags Per Million
Pig:61.5 nTPM
Mouse:44.1 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 97.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.3
2586 Male, age 75, left hemisphere 123.0
2666 Male, age 74, left hemisphere 98.0
1827 Male, age 72, unknown 94.4
2219 Male, age 76, both hemispheres 87.3
2828 Female, age 72, unknown 87.0
2019 Male, age 18, unknown 83.8
2411 Female, age 72, unknown 79.5
1833 Male, age 53, unknown 72.3
1870 Female, age 42, unknown 70.2
1830 Male, age 51, unknown 68.1
Dorsal raphe nucleus
nTPM: 78.3
2047 Male, age 72, unknown 84.1
2298 Female, age 72, unknown 82.3
1828 Male, age 53, unknown 79.6
2750 Male, age 76, both hemispheres 75.6
2016 Female, age 72, unknown 70.1
Inferior colliculus
nTPM: 75.7
1848 Female, age 42, unknown 76.4
2097 Female, age 72, unknown 76.0
1890 Male, age 53, unknown 75.3
2849 Male, age 72, unknown 75.1
Median raphe nucleus
nTPM: 81.8
2220 Male, age 76, midline 81.8
Periaquaductal grey, anterior
nTPM: 88.3
2502 Female, age 75, unknown 90.5
1795 Male, age 51, unknown 88.0
1947 Male, age 18, unknown 86.5
Periaquaductal grey, dorsal
nTPM: 74.7
1840 Male, age 53, unknown 88.0
1831 Male, age 72, unknown 75.2
2464 Female, age 72, unknown 74.5
2850 Male, age 76, both hemispheres 61.0
Periaquaductal grey, lateral
nTPM: 63.1
2053 Male, age 18, unknown 69.8
2140 Male, age 76, both hemispheres 64.0
2272 Male, age 74, both hemispheres 55.5
Pretectal area
nTPM: 81.8
1816 Male, age 51, unknown 104.4
2007 Male, age 72, unknown 100.4
1944 Female, age 72, unknown 96.3
1817 Female, age 42, unknown 94.1
1815 Male, age 53, unknown 88.0
2407 Male, age 75, both hemispheres 77.6
2667 Female, age 75, unknown 74.9
2825 Male, age 18, unknown 74.9
2224 Female, age 72, unknown 72.2
2316 Male, age 76, right hemisphere 60.4
2273 Male, age 74, both hemispheres 56.8
Red nucleus
nTPM: 72.3
2588 Male, age 74, left hemisphere 89.4
2584 Male, age 75, left hemisphere 84.9
2785 Male, age 18, unknown 78.8
1821 Female, age 72, unknown 77.7
2725 Female, age 75, unknown 76.2
2503 Female, age 72, unknown 72.4
1954 Female, age 42, unknown 66.7
1904 Male, age 53, unknown 65.9
2227 Male, age 72, unknown 65.9
2769 Male, age 72, unknown 65.8
1865 Male, age 51, unknown 64.4
2823 Male, age 76, right hemisphere 59.3
Substantia nigra
nTPM: 97.0
1916 Female, age 42, unknown 119.1
2665 Male, age 74, both hemispheres 118.7
1851 Male, age 51, unknown 103.4
2241 Male, age 72, unknown 102.4
1941 Male, age 53, unknown 101.5
1889 Female, age 72, unknown 92.7
2583 Male, age 75, right hemisphere 86.5
2409 Female, age 72, unknown 86.3
2699 Male, age 18, unknown 83.5
2590 Female, age 75, unknown 76.5
Superior colliculus
nTPM: 80.9
2664 Male, age 75, both hemispheres 107.8
2668 Female, age 75, unknown 98.7
2087 Female, age 72, unknown 85.7
1796 Male, age 53, unknown 84.1
2261 Male, age 18, unknown 83.8
1839 Male, age 51, unknown 78.2
1895 Male, age 76, right hemisphere 76.6
2587 Male, age 74, left hemisphere 74.7
1913 Female, age 42, unknown 60.8
1995 Male, age 72, unknown 59.1
Ventral tegmental area
nTPM: 85.2
2410 Female, age 72, unknown 94.1
2218 Male, age 76, both hemispheres 93.1
1915 Female, age 42, unknown 92.5
1942 Male, age 51, unknown 86.3
2021 Male, age 53, unknown 73.9
2223 Female, age 72, unknown 71.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.6
Samples: 139

Max nTPM: 37.2
Min nTPM: 12.3
Std nTPM: 5.2
Median nTPM: 22.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 37.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 37.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 34.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 34.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 33.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 33.2
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 32.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 32.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 31.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 31.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 31.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.4
FF:10158-103A5 76 years, female 28.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 61.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.0
Samples: 4

Max nTPM: 76.5
Min nTPM: 45.9
Sample A Female 70.1
Sample B Female 51.3
Sample C Male 76.5
Sample D Male 45.9
Midbrain
nTPM: 61.5
Samples: 4

Max nTPM: 88.7
Min nTPM: 39.6
Sample A Female 39.6
Sample B Female 51.7
Sample C Male 88.7
Sample D Male 65.9
Periaqueductal gray
nTPM: 50.7
Samples: 3

Max nTPM: 57.6
Min nTPM: 44.1
Sample B Female 50.5
Sample C Male 57.6
Sample D Male 44.1
Superior colliculi
nTPM: 61.4
Samples: 4

Max nTPM: 79.1
Min nTPM: 44.3
Sample A Female 57.2
Sample B Female 44.3
Sample C Male 79.1
Sample D Male 64.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 44.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.1
Samples: 4

Max nTPM: 49.3
Min nTPM: 36.1
Sample A Male 36.1
Sample B Male 45.3
Sample C Female 49.3
Sample D Female 45.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
71281194 Antisense, RP_050818_02_C04, Mouse strain C57BL/6J (56 days, male) 6.2

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