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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:761.2 nTPM
FANTOM5:1289.1 Scaled Tags Per Million
Pig:1473.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044999
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

761.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 761.2
Samples: 246

Max nTPM: 2460.3
Min nTPM: 183.0
Std nTPM: 458.3
Median nTPM: 670.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2460.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1807.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1787.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1777.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 1748.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1730.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1724.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1684.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1665.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1661.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1659.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1642.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1612.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1596.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1587.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1585.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1568.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1546.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1542.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1538.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1525.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1520.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1516.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1510.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1499.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1498.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1473.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1419.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1406.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1406.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1400.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1395.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1392.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1381.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1345.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1317.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1306.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1304.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1296.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1279.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1275.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1275.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1248.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1245.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1242.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1233.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1232.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1216.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1210.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1197.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1197.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1172.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1165.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1148.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1107.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1100.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1098.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1082.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1080.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1068.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1059.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1036.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1035.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1007.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1006.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1006.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1006.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1002.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 997.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 991.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 989.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 962.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 955.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 953.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 948.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 946.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 945.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 942.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 942.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 940.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 940.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 938.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 933.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 929.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 914.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 910.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 902.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 900.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 897.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 895.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 895.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 884.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 870.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 868.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 845.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 845.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 837.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 830.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 830.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 817.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 816.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 810.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 808.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 797.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 796.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 788.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 783.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 779.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 774.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 771.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 759.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 744.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 740.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 735.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 721.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 719.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 693.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 690.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 688.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 687.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 685.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 682.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 681.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 658.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 652.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 652.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 633.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 630.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 625.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 616.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 611.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 604.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 602.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 588.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 581.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 573.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 571.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 567.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 561.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 555.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 554.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 539.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 534.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 529.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 529.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 529.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 527.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 524.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 520.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 515.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 514.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 513.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 510.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 508.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 506.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 502.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 496.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 474.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 471.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 469.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 464.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 464.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 461.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 459.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 453.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 448.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 438.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 438.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 434.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 425.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 420.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 413.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 410.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 403.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 397.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 394.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 391.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 389.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 376.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 376.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 373.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 370.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 368.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 364.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 362.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 359.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 357.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 344.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 342.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 341.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 325.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 317.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 312.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 309.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 306.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 306.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 302.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 298.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 292.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 291.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 287.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 286.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 281.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 280.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 280.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 280.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 274.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 272.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 267.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 267.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 266.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 266.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 265.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 265.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 264.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 264.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 263.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 261.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 260.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 258.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 258.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 257.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 253.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 251.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 251.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 251.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 248.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 247.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 245.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 242.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 241.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 240.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 233.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 229.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 227.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 222.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 212.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 212.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 212.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 211.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 204.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 197.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 196.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 192.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 190.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 183.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1289.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1289.1
FF:10164-103B2 76 years, female 1289.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1473.8
Pig sample Sample description nTPM
Caudate
nTPM: 1473.8
Samples: 4

Max nTPM: 1836.9
Min nTPM: 1132.0
Sample A Female 1132.0
Sample B Female 1642.7
Sample C Male 1836.9
Sample D Male 1283.7

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