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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:222.8 nTPM
HPA:222.8 nTPM
GTEx:152.8 nTPM
FANTOM5:490.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044999
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

222.8
overview
Male, age 65
Small intestine sample 232
nTPM: 226.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 216.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 240.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 208.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 152.8
Samples: 187

Max nTPM: 299.5
Min nTPM: 71.6
Std nTPM: 46.1
Median nTPM: 145.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 299.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 287.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 287.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 283.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 258.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 256.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 250.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 247.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 234.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 233.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 232.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 230.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 229.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 229.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 226.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 221.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 218.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 217.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 214.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 213.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 212.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 210.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 208.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 206.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 204.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 203.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 203.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 203.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 200.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 199.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 198.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 197.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 197.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 196.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 196.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 195.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 194.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 191.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 188.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 187.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 184.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 183.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 182.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 182.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 181.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 181.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 181.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 179.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 179.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 177.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 177.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 177.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 176.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 174.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 174.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 173.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 172.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 171.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 171.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 171.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 171.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 170.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 170.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 170.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 169.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 169.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 169.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 168.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 168.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 165.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 165.7
GTEX-1192X-2526-SM-59868 50-59 years, male 165.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 164.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 164.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 162.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 161.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 155.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 155.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 154.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 154.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 153.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 153.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 153.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 152.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 152.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 152.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 150.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 150.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 150.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 148.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 146.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 145.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 145.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 145.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 144.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 144.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 144.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 144.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 144.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 143.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 143.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 142.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 139.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 138.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 137.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 136.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 136.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 136.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 135.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 135.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 133.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 133.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 133.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 131.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 131.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 131.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 131.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 131.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 130.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 130.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 128.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 127.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 125.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 123.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 122.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 122.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 121.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 121.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 121.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 120.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 120.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 119.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 118.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 118.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 118.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 118.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 117.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 116.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 116.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 116.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 115.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 115.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 115.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 115.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 114.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 114.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 114.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 114.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 113.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 112.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 112.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 112.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 111.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 111.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 111.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 110.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 109.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 109.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 108.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 108.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 108.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 107.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 107.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 104.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 101.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 101.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 100.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 99.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 99.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 97.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 96.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 96.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 95.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 95.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 95.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 93.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 92.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 91.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 90.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 89.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 86.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 86.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 82.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 81.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 76.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 75.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 71.6
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

490.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 490.5
FF:10024-101D6 15,40,85 years, mixed 490.5

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