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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1382.6 nTPM
GTEx:928.3 nTPM
FANTOM5:1423.7 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044999
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1382.6
Sample id Sample description nTPM
Hippocampus
nTPM: 1382.6
2621 Female, age 67, right hemisphere 1805.8
1898 Male, age 80, left hemisphere 1635.2
2148 Female, age 91, left hemisphere 1389.3
1855 Male, age 76, left hemisphere 1313.5
1911 Female, age 85, right hemisphere 1183.7
2529 Female, age 94, left hemisphere 968.0

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

928.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 928.3
Samples: 197

Max nTPM: 2590.2
Min nTPM: 212.3
Std nTPM: 570.0
Median nTPM: 788.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 2590.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 2406.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 2277.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 2267.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 2266.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 2237.2
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 2218.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 2155.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 2148.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 2144.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 2117.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 2089.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 2055.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 2015.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 1938.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1927.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 1896.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 1837.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 1824.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 1814.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1762.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 1758.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 1749.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 1740.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1722.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 1708.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 1698.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 1685.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 1677.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 1623.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 1576.2
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 1568.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 1543.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 1527.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 1510.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 1507.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 1506.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 1487.5
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 1471.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 1459.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 1406.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 1381.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 1366.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 1364.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 1354.2
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 1320.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 1317.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 1311.6
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 1309.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 1282.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 1268.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 1265.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 1265.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 1254.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 1230.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 1230.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 1197.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 1195.4
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 1155.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 1112.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 1107.1
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 1088.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 1083.1
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 1077.7
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 1069.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 1061.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 1042.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 1035.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 1026.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 1023.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 991.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 989.4
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 974.6
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 968.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 963.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 946.4
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 932.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 929.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 928.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 913.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 901.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 897.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 895.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 893.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 878.4
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 878.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 874.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 853.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 850.4
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 845.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 841.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 836.7
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 834.2
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 819.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 815.6
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 805.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 795.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 793.4
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 788.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 781.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 755.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 752.1
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 726.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 718.9
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 712.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 702.4
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 698.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 694.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 690.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 690.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 678.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 674.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 663.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 661.3
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 661.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 652.4
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 646.4
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 645.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 641.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 631.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 625.0
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 624.2
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 622.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 618.5
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 616.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 608.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 603.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 603.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 592.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 585.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 580.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 574.5
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 572.9
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 570.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 565.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 558.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 558.5
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 557.2
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 549.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 543.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 526.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 522.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 516.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 514.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 499.1
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 497.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 491.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 473.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 470.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 459.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 457.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 429.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 424.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 413.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 408.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 408.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 405.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 398.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 391.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 383.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 380.9
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 379.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 378.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 376.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 371.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 365.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 362.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 358.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 357.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 357.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 341.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 335.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 326.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 321.0
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 316.6
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 315.8
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 310.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 305.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 303.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 302.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 294.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 294.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 290.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 285.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 271.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 271.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 263.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 258.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 258.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 253.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 248.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 236.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 236.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 232.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 228.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 219.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 212.3
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1423.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1423.7
FF:10169-103B7 60 years, female 2097.9
FF:10153-102I9 76 years, female 749.5

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The Human Protein Atlas

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org