MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.5 nTPM
HPA Brain:60.9 nTPM
GTEx:7.5 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:9.3 nTPM
Mouse:3.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 60.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.5
1830 Male, age 51, unknown 62.9
1833 Male, age 53, unknown 62.7
2586 Male, age 75, left hemisphere 60.3
2411 Female, age 72, unknown 58.5
2019 Male, age 18, unknown 55.1
2828 Female, age 72, unknown 52.1
2666 Male, age 74, left hemisphere 51.1
1870 Female, age 42, unknown 49.2
1827 Male, age 72, unknown 39.0
2219 Male, age 76, both hemispheres 34.2
Dorsal raphe nucleus
nTPM: 36.8
2750 Male, age 76, both hemispheres 53.7
2016 Female, age 72, unknown 41.5
1828 Male, age 53, unknown 35.2
2298 Female, age 72, unknown 27.3
2047 Male, age 72, unknown 26.5
Inferior colliculus
nTPM: 32.1
2849 Male, age 72, unknown 37.0
1848 Female, age 42, unknown 34.9
1890 Male, age 53, unknown 31.7
2097 Female, age 72, unknown 24.8
Median raphe nucleus
nTPM: 30.4
2220 Male, age 76, midline 30.4
Periaquaductal grey, anterior
nTPM: 30.5
1947 Male, age 18, unknown 35.1
1795 Male, age 51, unknown 29.3
2502 Female, age 75, unknown 27.0
Periaquaductal grey, dorsal
nTPM: 28.2
2464 Female, age 72, unknown 42.8
1831 Male, age 72, unknown 28.5
2850 Male, age 76, both hemispheres 23.1
1840 Male, age 53, unknown 18.6
Periaquaductal grey, lateral
nTPM: 33.1
2272 Male, age 74, both hemispheres 37.9
2053 Male, age 18, unknown 35.4
2140 Male, age 76, both hemispheres 25.9
Pretectal area
nTPM: 38.0
2407 Male, age 75, both hemispheres 57.9
2316 Male, age 76, right hemisphere 54.5
1815 Male, age 53, unknown 51.7
1817 Female, age 42, unknown 40.9
2007 Male, age 72, unknown 39.8
2825 Male, age 18, unknown 36.5
2224 Female, age 72, unknown 32.6
2667 Female, age 75, unknown 28.1
2273 Male, age 74, both hemispheres 27.7
1944 Female, age 72, unknown 24.8
1816 Male, age 51, unknown 23.2
Red nucleus
nTPM: 60.9
1904 Male, age 53, unknown 72.5
1865 Male, age 51, unknown 71.8
2823 Male, age 76, right hemisphere 70.4
2785 Male, age 18, unknown 70.0
2769 Male, age 72, unknown 67.0
2227 Male, age 72, unknown 66.0
1821 Female, age 72, unknown 55.3
2503 Female, age 72, unknown 54.8
1954 Female, age 42, unknown 54.1
2584 Male, age 75, left hemisphere 53.6
2588 Male, age 74, left hemisphere 49.4
2725 Female, age 75, unknown 46.4
Substantia nigra
nTPM: 40.2
2590 Female, age 75, unknown 75.8
2583 Male, age 75, right hemisphere 62.2
1851 Male, age 51, unknown 39.7
2409 Female, age 72, unknown 38.4
1889 Female, age 72, unknown 36.3
2699 Male, age 18, unknown 33.3
1941 Male, age 53, unknown 32.0
2665 Male, age 74, both hemispheres 29.7
2241 Male, age 72, unknown 29.5
1916 Female, age 42, unknown 25.2
Superior colliculus
nTPM: 44.8
1995 Male, age 72, unknown 60.7
1895 Male, age 76, right hemisphere 55.4
1913 Female, age 42, unknown 53.8
2664 Male, age 75, both hemispheres 45.6
1839 Male, age 51, unknown 45.3
2587 Male, age 74, left hemisphere 42.7
2668 Female, age 75, unknown 41.2
1796 Male, age 53, unknown 39.2
2087 Female, age 72, unknown 32.4
2261 Male, age 18, unknown 31.9
Ventral tegmental area
nTPM: 37.2
2410 Female, age 72, unknown 44.9
2223 Female, age 72, unknown 40.9
1942 Male, age 51, unknown 37.8
2021 Male, age 53, unknown 34.3
2218 Male, age 76, both hemispheres 33.0
1915 Female, age 42, unknown 32.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.5
Samples: 139

Max nTPM: 27.4
Min nTPM: 1.7
Std nTPM: 4.6
Median nTPM: 6.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 27.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 22.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 21.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 21.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 20.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 17.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 16.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 16.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 16.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 15.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 15.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.3
Samples: 4

Max nTPM: 11.4
Min nTPM: 7.8
Sample A Female 9.3
Sample B Female 11.4
Sample C Male 7.8
Sample D Male 8.7
Midbrain
nTPM: 7.2
Samples: 4

Max nTPM: 12.8
Min nTPM: 4.5
Sample A Female 12.8
Sample B Female 6.6
Sample C Male 5.0
Sample D Male 4.5
Periaqueductal gray
nTPM: 7.8
Samples: 3

Max nTPM: 9.5
Min nTPM: 6.8
Sample B Female 7.1
Sample C Male 9.5
Sample D Male 6.8
Superior colliculi
nTPM: 6.7
Samples: 4

Max nTPM: 9.2
Min nTPM: 5.0
Sample A Female 9.2
Sample B Female 6.5
Sample C Male 5.0
Sample D Male 6.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.4
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.9
Sample A Male 3.6
Sample B Male 3.3
Sample C Female 2.9
Sample D Female 3.8

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