MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.1 nTPM
HPA Brain:54.8 nTPM
GTEx:25.1 nTPM
FANTOM5:14.3 Scaled Tags Per Million
Pig:26.8 nTPM
Mouse:32.1 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.8
2586 Male, age 75, left hemisphere 85.4
2219 Male, age 76, both hemispheres 62.5
2828 Female, age 72, unknown 60.0
2666 Male, age 74, left hemisphere 59.7
2411 Female, age 72, unknown 50.8
1827 Male, age 72, unknown 50.5
1830 Male, age 51, unknown 49.6
1870 Female, age 42, unknown 46.2
1833 Male, age 53, unknown 45.5
2019 Male, age 18, unknown 37.5
Dorsal raphe nucleus
nTPM: 46.4
2047 Male, age 72, unknown 50.7
2750 Male, age 76, both hemispheres 48.3
1828 Male, age 53, unknown 47.2
2016 Female, age 72, unknown 44.8
2298 Female, age 72, unknown 41.1
Inferior colliculus
nTPM: 43.8
2849 Male, age 72, unknown 49.9
1848 Female, age 42, unknown 43.9
1890 Male, age 53, unknown 43.4
2097 Female, age 72, unknown 38.2
Median raphe nucleus
nTPM: 47.5
2220 Male, age 76, midline 47.5
Periaquaductal grey, anterior
nTPM: 54.4
1947 Male, age 18, unknown 56.7
1795 Male, age 51, unknown 55.6
2502 Female, age 75, unknown 51.0
Periaquaductal grey, dorsal
nTPM: 48.9
1831 Male, age 72, unknown 52.4
2464 Female, age 72, unknown 48.9
2850 Male, age 76, both hemispheres 47.5
1840 Male, age 53, unknown 47.0
Periaquaductal grey, lateral
nTPM: 48.8
2140 Male, age 76, both hemispheres 53.5
2053 Male, age 18, unknown 51.3
2272 Male, age 74, both hemispheres 41.7
Pretectal area
nTPM: 46.5
2316 Male, age 76, right hemisphere 56.0
2825 Male, age 18, unknown 55.7
2407 Male, age 75, both hemispheres 55.2
2667 Female, age 75, unknown 48.7
2224 Female, age 72, unknown 47.0
1816 Male, age 51, unknown 44.5
1815 Male, age 53, unknown 44.1
2007 Male, age 72, unknown 43.4
2273 Male, age 74, both hemispheres 40.6
1817 Female, age 42, unknown 40.4
1944 Female, age 72, unknown 36.2
Red nucleus
nTPM: 45.9
2584 Male, age 75, left hemisphere 59.1
2769 Male, age 72, unknown 51.1
2588 Male, age 74, left hemisphere 50.4
2823 Male, age 76, right hemisphere 49.9
2227 Male, age 72, unknown 46.9
2503 Female, age 72, unknown 45.0
2725 Female, age 75, unknown 45.0
1904 Male, age 53, unknown 43.4
1865 Male, age 51, unknown 42.8
2785 Male, age 18, unknown 40.3
1954 Female, age 42, unknown 39.7
1821 Female, age 72, unknown 37.3
Substantia nigra
nTPM: 40.0
2699 Male, age 18, unknown 46.7
2583 Male, age 75, right hemisphere 46.2
1916 Female, age 42, unknown 42.8
1851 Male, age 51, unknown 42.3
1941 Male, age 53, unknown 42.0
2665 Male, age 74, both hemispheres 41.9
2590 Female, age 75, unknown 38.0
1889 Female, age 72, unknown 37.5
2409 Female, age 72, unknown 32.1
2241 Male, age 72, unknown 30.1
Superior colliculus
nTPM: 50.4
2664 Male, age 75, both hemispheres 72.2
1796 Male, age 53, unknown 53.5
2668 Female, age 75, unknown 53.0
2261 Male, age 18, unknown 51.2
1839 Male, age 51, unknown 49.8
1913 Female, age 42, unknown 48.0
1995 Male, age 72, unknown 47.6
2587 Male, age 74, left hemisphere 44.8
1895 Male, age 76, right hemisphere 42.5
2087 Female, age 72, unknown 41.1
Ventral tegmental area
nTPM: 46.4
2021 Male, age 53, unknown 53.7
1942 Male, age 51, unknown 50.3
2223 Female, age 72, unknown 48.5
1915 Female, age 42, unknown 44.1
2218 Male, age 76, both hemispheres 42.4
2410 Female, age 72, unknown 39.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 25.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.1
Samples: 139

Max nTPM: 43.2
Min nTPM: 13.1
Std nTPM: 5.9
Median nTPM: 24.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 43.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 41.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 41.3
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 37.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 37.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 36.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 36.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 36.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 36.2
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 35.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 34.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.3
FF:10158-103A5 76 years, female 14.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.9
Samples: 4

Max nTPM: 27.5
Min nTPM: 18.3
Sample A Female 26.2
Sample B Female 18.3
Sample C Male 27.5
Sample D Male 19.6
Midbrain
nTPM: 26.9
Samples: 4

Max nTPM: 34.1
Min nTPM: 19.2
Sample A Female 27.2
Sample B Female 19.2
Sample C Male 34.1
Sample D Male 26.9
Periaqueductal gray
nTPM: 18.6
Samples: 3

Max nTPM: 21.8
Min nTPM: 16.8
Sample B Female 17.1
Sample C Male 21.8
Sample D Male 16.8
Superior colliculi
nTPM: 23.4
Samples: 4

Max nTPM: 26.3
Min nTPM: 15.7
Sample A Female 26.1
Sample B Female 15.7
Sample C Male 26.3
Sample D Male 25.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.1
Samples: 4

Max nTPM: 38.3
Min nTPM: 29.6
Sample A Male 38.3
Sample B Male 29.6
Sample C Female 30.6
Sample D Female 29.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69169827 Antisense, RP_050321_04_C08, Mouse strain C57BL/6J (56 days, male) 1.5

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