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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:126.2 nTPM
HPA Brain:196.1 nTPM
GTEx:126.2 nTPM
FANTOM5:52.8 Scaled Tags Per Million
Pig:108.9 nTPM
Mouse:255.7 nTPM
Allen mouse:11.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.1
Sample id Sample description nTPM
Amygdala
nTPM: 157.3
2814 Male, age 76, right hemisphere 224.6
2517 Female, age 94, left hemisphere 150.9
1987 Female, age 91, left hemisphere 147.6
2514 Male, age 75, right hemisphere 137.2
2695 Female, age 67, right hemisphere 126.1
Basal amygdala
nTPM: 196.1
2827 Female, age 67, right hemisphere 242.9
2243 Female, age 91, right hemisphere 236.8
2685 Female, age 94, left hemisphere 221.2
1955 Male, age 76, both hemispheres 172.5
2110 Male, age 80, left hemisphere 156.9
2609 Male, age 75, right hemisphere 146.1
Central amygdala
nTPM: 193.6
2826 Female, age 94, left hemisphere 244.2
1905 Male, age 76, both hemispheres 203.4
2239 Male, age 80, left hemisphere 202.7
2701 Female, age 91, right hemisphere 169.7
2515 Male, age 75, right hemisphere 148.1
Corticomedial amygdala
nTPM: 178.7
2535 Female, age 67, right hemisphere 242.1
2429 Female, age 94, left hemisphere 205.7
2829 Male, age 80, left hemisphere 176.9
2242 Female, age 91, right hemisphere 171.4
2240 Male, age 76, both hemispheres 143.5
2428 Male, age 75, right hemisphere 132.4
Lateral amygdala
nTPM: 194.6
2534 Female, age 94, left hemisphere 241.4
1883 Male, age 76, both hemispheres 212.0
2830 Female, age 67, right hemisphere 190.7
2256 Male, age 80, left hemisphere 190.6
2255 Female, age 91, right hemisphere 189.5
2516 Male, age 75, right hemisphere 143.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 126.2
Samples: 152

Max nTPM: 257.5
Min nTPM: 16.6
Std nTPM: 42.1
Median nTPM: 125.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 257.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 251.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 238.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 217.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 210.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 200.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 194.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 191.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 188.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 186.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 185.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 183.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 182.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 180.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 178.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 178.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 177.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 176.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 176.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 174.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 171.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 169.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 168.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 167.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 167.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 165.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 163.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 163.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 163.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 162.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 161.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 159.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 158.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 157.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 156.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 156.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 156.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 154.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 154.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 153.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 153.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 153.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 151.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 150.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 148.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 148.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 147.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 146.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 146.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 146.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 145.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 145.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 143.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 142.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 142.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 142.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 140.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 140.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 139.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 137.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 136.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 135.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 135.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 133.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 133.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 130.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 130.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 129.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 128.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 128.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 127.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 127.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 127.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 127.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 126.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 126.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 124.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 122.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 121.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 121.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 120.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 120.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 120.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 118.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 117.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 117.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 116.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 116.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 114.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 113.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 113.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 111.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 110.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 109.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 109.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 109.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 108.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 107.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 107.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 107.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 107.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 107.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 105.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 104.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 104.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 103.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 103.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 103.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 102.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 101.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 100.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 99.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 98.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 97.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 96.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 95.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 95.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 95.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 93.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 93.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 93.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 92.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 89.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 89.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 87.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 86.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 84.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 84.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 83.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 83.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 78.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 77.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 77.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 77.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 76.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 75.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 73.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 70.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 70.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 69.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 68.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 68.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 64.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 61.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 58.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 58.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 57.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 57.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 49.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 45.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 31.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 16.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

52.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 52.8
FF:10151-102I7 76 years, female 52.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.9
Pig sample Sample description nTPM
Amygdala
nTPM: 108.9
Samples: 4

Max nTPM: 124.0
Min nTPM: 92.9
Sample A Female 124.0
Sample B Female 92.9
Sample C Male 120.5
Sample D Male 98.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

255.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 255.7
Samples: 4

Max nTPM: 316.9
Min nTPM: 219.5
Sample A Male 219.5
Sample B Male 252.2
Sample C Female 316.9
Sample D Female 234.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.3
100144096 Antisense, RP_110407_03_B09, Mouse strain C57BL/6J (56 days, male) 11.3

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