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VPS11
HPA
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  • VPS11
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

VPS11
Synonyms PEP5, RNF108
Gene descriptioni

Full gene name according to HGNC.

VPS11 core subunit of CORVET and HOPS complexes
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at transcript level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 11
Cytoband q23.3
Chromosome location (bp) 119067818 - 119081972
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000160695 (version 109)
Entrez gene 55823
HGNC HGNC:14583
UniProt
neXtProt
GeneCards VPS11
Antibodypedia VPS11 antibodies


PROTEIN FUNCTION
Gene summary (Entrez)i

Useful information about the gene from Entrez

Vesicle mediated protein sorting plays an important role in segregation of intracellular molecules into distinct organelles. Genetic studies in yeast have identified more than 40 vacuolar protein sorting (VPS) genes involved in vesicle transport to vacuoles. This gene encodes the human homolog of yeast class C Vps11 protein. The mammalian class C Vps proteins are predominantly associated with late endosomes/lysosomes, and like their yeast counterparts, may mediate vesicle trafficking steps in the endosome/lysosome pathway. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2014]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
VPS11-204
ENSP00000485025
ENST00000530809
A0A087X2J4
[Direct mapping] Vacuolar protein sorting-associated protein 11 homolog
Show all
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of lipid/glycolipid metabolism
   Nervous system diseases
   Other nervous and sensory system diseases
Show all
GO:0005515 [protein binding]
GO:0006886 [intracellular protein transport]
GO:0012505 [endomembrane system]
GO:0016192 [vesicle-mediated transport]
GO:0046872 [metal ion binding]
GO:0046907 [intracellular transport]
Show all
181 aa
20.7 kDa
No 0
VPS11-206
ENSP00000481807
ENST00000614944
B7Z879
[Direct mapping] Vacuolar protein sorting-associated protein 11 homolog
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of lipid/glycolipid metabolism
   Nervous system diseases
   Other nervous and sensory system diseases
Show all
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005776 [autophagosome]
GO:0006886 [intracellular protein transport]
GO:0006914 [autophagy]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0030136 [clathrin-coated vesicle]
GO:0030897 [HOPS complex]
GO:0031410 [cytoplasmic vesicle]
GO:0031902 [late endosome membrane]
GO:0033263 [CORVET complex]
GO:0046872 [metal ion binding]
GO:0046907 [intracellular transport]
Show all
931 aa
107.4 kDa
No 0
VPS11-207
ENSP00000481126
ENST00000621676
A0A087WXL6
[Direct mapping] Vacuolar protein sorting-associated protein 11 homolog
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of lipid/glycolipid metabolism
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Kim et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005776 [autophagosome]
GO:0005884 [actin filament]
GO:0006886 [intracellular protein transport]
GO:0006914 [autophagy]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0030123 [AP-3 adaptor complex]
GO:0030136 [clathrin-coated vesicle]
GO:0030897 [HOPS complex]
GO:0031410 [cytoplasmic vesicle]
GO:0031902 [late endosome membrane]
GO:0033263 [CORVET complex]
GO:0046872 [metal ion binding]
GO:0046907 [intracellular transport]
GO:0048786 [presynaptic active zone]
GO:1901998 [toxin transport]
Show all
941 aa
107.8 kDa
No 0

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