HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:37.1 nTPM
HPA Brain:109.3 nTPM
GTEx:37.1 nTPM
FANTOM5:87.8 Scaled Tags Per Million
Pig:40.1 nTPM
Mouse:52.1 nTPM
Allen mouse:17.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003890Antibody HPA051519Antibody CAB056157
Glial cells MediumLowMedium
Neuronal cells HighMediumHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 109.3
Sample id Sample description nTPM
Hippocampus
nTPM: 91.7
1898 Male, age 80, left hemisphere 103.8
2621 Female, age 67, right hemisphere 98.8
2529 Female, age 94, left hemisphere 94.9
1855 Male, age 76, left hemisphere 92.4
2148 Female, age 91, left hemisphere 90.7
1911 Female, age 85, right hemisphere 69.8
Dentate gyrus
nTPM: 87.8
1927 Female, age 91, both hemispheres 98.0
2530 Female, age 94, left hemisphere 95.4
2246 Female, age 85, both hemispheres 85.9
2531 Female, age 67, both hemispheres 85.9
2010 Male, age 76, both hemispheres 84.0
2528 Male, age 74, both hemispheres 77.4
Entorhinal gyrus
nTPM: 96.6
1938 Female, age 85, left hemisphere 104.0
1787 Male, age 76, left hemisphere 101.4
2764 Male, age 80, right hemisphere 99.3
2613 Female, age 94, left hemisphere 97.9
2117 Female, age 91, right hemisphere 91.9
2686 Male, age 75, right hemisphere 85.4
Hippocampus, CA1
nTPM: 89.2
2749 Male, age 80, left hemisphere 108.7
1873 Female, age 85, both hemispheres 92.8
2527 Male, age 74, both hemispheres 82.7
2045 Male, age 76, both hemispheres 82.4
2082 Female, age 91, right hemisphere 79.3
Hippocampus, CA2
nTPM: 92.2
1963 Male, age 80, left hemisphere 104.7
1892 Male, age 76, both hemispheres 104.2
2437 Female, age 94, left hemisphere 94.9
1940 Female, age 85, left hemisphere 89.6
2249 Male, age 74, both hemispheres 81.5
2113 Female, age 91, right hemisphere 78.2
Hippocampus, CA3
nTPM: 88.7
2137 Male, age 80, left hemisphere 96.4
1867 Male, age 76, both hemispheres 94.0
2620 Female, age 94, left hemisphere 91.9
2861 Female, age 67, both hemispheres 89.0
2436 Male, age 74, both hemispheres 80.8
1891 Female, age 85, both hemispheres 79.9
Parahippocampal cortex
nTPM: 93.4
1850 Male, age 80, both hemispheres 112.0
2245 Female, age 91, both hemispheres 104.8
2532 Female, age 72, left hemisphere 97.4
1990 Female, age 91, right hemisphere 95.5
1933 Female, age 85, both hemispheres 94.2
2250 Female, age 67, right hemisphere 92.6
2622 Female, age 67, right hemisphere 85.7
2693 Female, age 94, both hemispheres 84.2
2692 Male, age 74, both hemispheres 84.1
2018 Male, age 76, both hemispheres 83.9
Perirhinal gyrus
nTPM: 109.3
1847 Female, age 91, left hemisphere 131.0
1794 Male, age 80, right hemisphere 108.7
1841 Female, age 85, right hemisphere 106.5
2848 Male, age 76, right hemisphere 102.5
2521 Female, age 94, right hemisphere 97.7
Subiculum
nTPM: 89.0
2438 Female, age 94, left hemisphere 104.0
1977 Female, age 85, both hemispheres 96.6
2619 Male, age 74, both hemispheres 90.9
1901 Male, age 80, both hemispheres 89.3
2729 Female, age 91, right hemisphere 77.1
2042 Male, age 76, both hemispheres 76.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 37.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 37.1
Samples: 197

Max nTPM: 68.6
Min nTPM: 26.2
Std nTPM: 5.9
Median nTPM: 35.9
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 68.6
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 56.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 52.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 51.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 51.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 51.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 51.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 50.9
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 50.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 50.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 50.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 87.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 87.8
FF:10169-103B7 60 years, female 89.3
FF:10153-102I9 76 years, female 86.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 40.1
Pig sample Sample description nTPM
Subiculum
nTPM: 40.1
Samples: 4

Max nTPM: 53.2
Min nTPM: 32.1
Sample A Female 53.2
Sample B Female 35.0
Sample C Male 40.2
Sample D Male 32.1
Dorsal hippocampus
nTPM: 33.8
Samples: 4

Max nTPM: 37.7
Min nTPM: 29.4
Sample A Female 37.7
Sample B Female 36.5
Sample C Male 31.7
Sample D Male 29.4
Entorhinal cortex
nTPM: 40.0
Samples: 4

Max nTPM: 45.8
Min nTPM: 35.4
Sample A Female 45.8
Sample B Female 35.4
Sample C Male 41.1
Sample D Male 37.5
Ventral hippocampus
nTPM: 39.0
Samples: 4

Max nTPM: 53.3
Min nTPM: 28.8
Sample A Female 40.9
Sample B Female 28.8
Sample C Male 53.3
Sample D Male 33.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 52.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 52.1
Samples: 4

Max nTPM: 61.9
Min nTPM: 46.7
Sample A Male 49.5
Sample B Male 50.4
Sample C Female 46.7
Sample D Female 61.9
Hippocampal formation
nTPM: 40.8
Samples: 4

Max nTPM: 43.9
Min nTPM: 36.4
Sample A Male 36.4
Sample B Male 43.9
Sample C Female 43.5
Sample D Female 39.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 17.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.4
68845400 Antisense, RP_050224_01_F12, Mouse strain C57BL/6J (56 days, male) 17.4

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