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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:482.2 nTPM
FANTOM5:786.9 Scaled Tags Per Million
Pig:306.5 nTPM
Allen mouse:0.0 Expression energy

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

482.2
Sample id Sample description nTPM
Area postrema
nTPM: 287.0
2799 Male, age 61, both hemispheres 389.8
2306 Male, age 80, both hemispheres 325.6
2054 Male, age 76, both hemispheres 145.4
Dorsal medullary reticular nucleus
nTPM: 334.1
2373 Male, age 61, both hemispheres 396.7
2088 Male, age 76, both hemispheres 392.6
2040 Female, age 85, both hemispheres 212.9
Dorsal motor vagal complex
nTPM: 284.9
2797 Male, age 61, both hemispheres 649.0
2185 Male, age 76, both hemispheres 349.3
2807 Female, age 85, both hemispheres 277.2
2844 Male, age 55, unknown 272.8
2643 Male, age 74, both hemispheres 201.3
2133 Female, age 91, both hemispheres 184.9
2813 Female, age 72, unknown 176.0
2000 Male, age 74, unknown 169.1
Gigantocellular reticular nuclei, medullary
nTPM: 294.4
2314 Male, age 61, both hemispheres 566.7
2387 Female, age 91, both hemispheres 354.7
2310 Male, age 80, both hemispheres 331.7
1876 Female, age 85, both hemispheres 217.5
2022 Male, age 76, right hemisphere 157.8
2462 Male, age 74, both hemispheres 138.2
Gigantocellular reticular nuclei, pars
nTPM: 309.1
2330 Male, age 80, both hemispheres 378.0
2336 Male, age 61, both hemispheres 343.6
2706 Male, age 80, both hemispheres 308.5
2084 Female, age 85, both hemispheres 291.5
2168 Male, age 76, both hemispheres 223.9
Inferior olive
nTPM: 371.5
2178 Male, age 61, both hemispheres 414.3
2628 Female, age 91, both hemispheres 402.0
2085 Female, age 85, both hemispheres 399.6
2379 Male, age 80, both hemispheres 389.8
2563 Male, age 74, both hemispheres 251.6
Lateral medullary reticular nucleus
nTPM: 325.4
2374 Male, age 61, both hemispheres 393.1
2190 Female, age 85, both hemispheres 351.3
2852 Male, age 80, both hemispheres 344.7
2804 Female, age 91, both hemispheres 315.0
2305 Male, age 74, both hemispheres 303.0
2044 Male, age 76, both hemispheres 245.2
Medial olivary nucleus
nTPM: 402.5
1962 Male, age 76, both hemispheres 581.6
2138 Female, age 91, both hemispheres 411.8
1943 Male, age 61, both hemispheres 330.7
2851 Male, age 80, both hemispheres 285.9
Medial vestibular nucleus
nTPM: 260.2
2624 Male, age 61, both hemispheres 363.8
2093 Male, age 80, both hemispheres 308.8
2803 Female, age 91, both hemispheres 295.8
2801 Male, age 74, both hemispheres 228.1
2743 Female, age 85, both hemispheres 218.4
2134 Male, age 76, both hemispheres 146.1
Motor hypoglossal nucleus
nTPM: 326.0
2182 Male, age 80, both hemispheres 542.9
2132 Female, age 85, both hemispheres 349.1
2125 Female, age 91, both hemispheres 346.7
2461 Male, age 61, both hemispheres 249.5
2277 Male, age 76, both hemispheres 142.0
Nucleus ambiguus
nTPM: 462.3
2071 Male, age 76, both hemispheres 522.1
2096 Female, age 85, both hemispheres 402.6
Nucleus cuneatus
nTPM: 386.7
2100 Male, age 76, both hemispheres 478.6
2380 Male, age 80, both hemispheres 452.0
2805 Female, age 91, both hemispheres 447.2
2808 Female, age 85, both hemispheres 437.5
2381 Male, age 80, both hemispheres 371.5
2376 Male, age 61, both hemispheres 341.0
2131 Male, age 76, both hemispheres 333.7
2562 Male, age 61, both hemispheres 322.1
2564 Male, age 74, both hemispheres 296.6
Nucleus gracilis
nTPM: 369.2
2299 Female, age 85, both hemispheres 460.1
2382 Male, age 80, both hemispheres 349.1
2627 Male, age 74, both hemispheres 298.4
Nucleus raphe obscurus
nTPM: 482.2
2142 Male, age 76, midline 617.7
2845 Female, age 85, midline 456.2
2800 Male, age 61, midline 372.8
Nucleus raphe pallidus
nTPM: 410.3
2145 Male, age 76, midline 697.7
2183 Male, age 80, midline 320.5
1924 Male, age 61, midline 212.7
Nucleus tractus solitarii
nTPM: 153.7
2191 Female, age 85, both hemispheres 207.8
2307 Male, age 80, both hemispheres 171.3
2656 Male, age 76, both hemispheres 158.9
2144 Female, age 91, right hemisphere 77.0
Parvicellular reticular nuclei
nTPM: 308.2
2095 Male, age 76, both hemispheres 406.3
2119 Male, age 80, both hemispheres 294.2
2558 Male, age 74, both hemispheres 224.0
Parvicellular reticular nuclei, medullary
nTPM: 252.5
2189 Female, age 91, both hemispheres 280.0
2181 Male, age 80, left hemisphere 251.2
2091 Female, age 85, both hemispheres 226.2
Peritrigeminal nucleus
nTPM: 342.8
2136 Male, age 76, both hemispheres 413.6
2067 Female, age 85, both hemispheres 320.8
2179 Male, age 61, both hemispheres 294.0
Prepositus hypoglossal nucleus
nTPM: 272.9
2855 Female, age 85, right hemisphere 356.2
2086 Male, age 80, both hemispheres 189.6
Spinal trigeminal nucleus, caudal
nTPM: 316.7
2308 Male, age 80, both hemispheres 423.9
2312 Male, age 61, both hemispheres 401.6
2447 Male, age 76, both hemispheres 334.8
2642 Male, age 74, both hemispheres 218.0
2390 Female, age 91, both hemispheres 205.3
Spinal trigeminal nucleus, interpolar
nTPM: 233.9
2066 Male, age 76, right hemisphere 251.3
2033 Male, age 80, both hemispheres 250.3
2389 Female, age 91, both hemispheres 243.2
2625 Male, age 61, both hemispheres 240.9
2386 Female, age 85, both hemispheres 183.8
Spinal vestibular nucleus
nTPM: 302.8
2806 Female, age 85, both hemispheres 343.9
2748 Male, age 76, both hemispheres 338.1
2384 Male, age 74, both hemispheres 318.2
2796 Male, age 61, both hemispheres 300.1
2780 Male, age 80, both hemispheres 261.3
2186 Female, age 91, both hemispheres 255.5
Superior vestibular nucleus
nTPM: 207.2
2061 Male, age 76, both hemispheres 244.6
2015 Male, age 80, both hemispheres 221.1
2383 Male, age 74, both hemispheres 155.7
Ventral medullary reticular nucleus
nTPM: 366.3
2372 Male, age 61, both hemispheres 404.4
2060 Male, age 76, both hemispheres 328.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 330.5
2302 Female, age 91, both hemispheres 397.4
2118 Male, age 80, both hemispheres 373.8
1986 Male, age 76, both hemispheres 320.9
2180 Male, age 61, both hemispheres 315.0
2741 Female, age 85, both hemispheres 245.5

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

786.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 786.9
FF:10038-101F2 18-64 years, mixed 1206.9
FF:10155-103A2 76 years, female 682.7
FF:10174-103C3 60 years, female 471.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

306.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 306.5
Samples: 4

Max nTPM: 361.8
Min nTPM: 252.5
Sample A Female 268.4
Sample B Female 252.5
Sample C Male 361.8
Sample D Male 343.4

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.0
73712816 Antisense, RP_051206_02_D12, Mouse strain C57BL/6J (56 days, male) 0.0

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