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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:55.1 nTPM
GTEx:55.1 nTPM
FANTOM5:16.6 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051969
Squamous epithelial cells Low



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 55.1
Samples: 156

Max nTPM: 208.7
Min nTPM: 7.1
Std nTPM: 39.3
Median nTPM: 48.8
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 208.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 155.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 150.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 149.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 145.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 132.8
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 131.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 130.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 121.0
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 120.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 117.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 114.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 114.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 114.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 110.7
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 105.8
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 105.5
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 103.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 103.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 101.2
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 100.3
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 99.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 98.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 97.1
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 95.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 94.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 93.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 92.0
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 90.8
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 90.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 89.0
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 88.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 88.7
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 88.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 88.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 88.1
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 87.2
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 86.1
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 85.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 84.4
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 83.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 82.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 80.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 79.7
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 78.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 78.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 78.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 76.9
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 76.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 76.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 75.9
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 72.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 72.2
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 70.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 70.1
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 68.1
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 65.9
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 65.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 62.4
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 60.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 59.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 58.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 57.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 57.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 56.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 56.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 55.5
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 55.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 54.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 54.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 54.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 53.7
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 52.8
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 52.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 50.9
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 49.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 49.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 49.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 48.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 48.2
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 48.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 47.1
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 46.9
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 45.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 45.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 44.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 44.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 39.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 38.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 37.8
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 36.5
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 33.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 32.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 31.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 31.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 31.3
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 31.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 31.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 30.2
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 29.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 28.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 28.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 27.7
GTEX-16NPV-2526-SM-6M483 50-59 years, female 26.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 25.9
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 25.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 25.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 25.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 24.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 23.9
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 23.7
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 22.8
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 22.6
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 22.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 21.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 21.4
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 20.8
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 20.7
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 20.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 20.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 18.6
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 18.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 17.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 17.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 17.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 16.5
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 16.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 15.4
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 15.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 14.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 13.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 13.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 13.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 13.2
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 13.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 12.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 12.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 12.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 12.2
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 12.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 11.2
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 10.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 10.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 10.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 10.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 10.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 10.2
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 9.9
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 9.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 9.8
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 9.2
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 8.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 8.5
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 8.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 8.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 7.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

16.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 16.6
FF:10204-103F6 68 years, female 16.6

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