MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.8 nTPM
HPA Brain:89.8 nTPM
GTEx:22.8 nTPM
FANTOM5:38.7 Scaled Tags Per Million
Pig:74.5 nTPM
Mouse:40.9 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 89.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.7
2586 Male, age 75, left hemisphere 132.1
2666 Male, age 74, left hemisphere 106.2
2219 Male, age 76, both hemispheres 92.6
2828 Female, age 72, unknown 91.8
1833 Male, age 53, unknown 86.6
2019 Male, age 18, unknown 80.7
1827 Male, age 72, unknown 79.7
1830 Male, age 51, unknown 77.1
1870 Female, age 42, unknown 68.8
2411 Female, age 72, unknown 61.1
Dorsal raphe nucleus
nTPM: 70.0
2750 Male, age 76, both hemispheres 76.6
2047 Male, age 72, unknown 74.2
1828 Male, age 53, unknown 70.5
2016 Female, age 72, unknown 68.6
2298 Female, age 72, unknown 60.3
Inferior colliculus
nTPM: 66.7
2849 Male, age 72, unknown 77.1
1848 Female, age 42, unknown 66.4
1890 Male, age 53, unknown 66.2
2097 Female, age 72, unknown 57.1
Median raphe nucleus
nTPM: 78.9
2220 Male, age 76, midline 78.9
Periaquaductal grey, anterior
nTPM: 83.7
1947 Male, age 18, unknown 91.0
1795 Male, age 51, unknown 84.2
2502 Female, age 75, unknown 75.8
Periaquaductal grey, dorsal
nTPM: 66.2
2850 Male, age 76, both hemispheres 71.8
1831 Male, age 72, unknown 70.8
1840 Male, age 53, unknown 61.7
2464 Female, age 72, unknown 60.5
Periaquaductal grey, lateral
nTPM: 60.5
2140 Male, age 76, both hemispheres 62.5
2053 Male, age 18, unknown 60.2
2272 Male, age 74, both hemispheres 59.0
Pretectal area
nTPM: 79.4
2007 Male, age 72, unknown 95.0
1816 Male, age 51, unknown 93.4
1817 Female, age 42, unknown 93.2
1815 Male, age 53, unknown 92.9
1944 Female, age 72, unknown 91.6
2407 Male, age 75, both hemispheres 88.9
2667 Female, age 75, unknown 74.4
2825 Male, age 18, unknown 70.9
2316 Male, age 76, right hemisphere 58.5
2224 Female, age 72, unknown 58.3
2273 Male, age 74, both hemispheres 56.5
Red nucleus
nTPM: 79.0
2584 Male, age 75, left hemisphere 103.2
2785 Male, age 18, unknown 87.9
1865 Male, age 51, unknown 79.4
2823 Male, age 76, right hemisphere 79.3
1904 Male, age 53, unknown 76.6
1954 Female, age 42, unknown 76.6
2588 Male, age 74, left hemisphere 76.3
1821 Female, age 72, unknown 75.4
2227 Male, age 72, unknown 75.3
2725 Female, age 75, unknown 73.0
2769 Male, age 72, unknown 73.0
2503 Female, age 72, unknown 71.1
Substantia nigra
nTPM: 89.8
2583 Male, age 75, right hemisphere 113.4
1916 Female, age 42, unknown 112.8
2665 Male, age 74, both hemispheres 106.3
1941 Male, age 53, unknown 95.5
1851 Male, age 51, unknown 90.0
2699 Male, age 18, unknown 86.6
1889 Female, age 72, unknown 84.1
2590 Female, age 75, unknown 77.9
2241 Male, age 72, unknown 74.6
2409 Female, age 72, unknown 57.0
Superior colliculus
nTPM: 82.8
2664 Male, age 75, both hemispheres 115.8
2668 Female, age 75, unknown 113.7
1796 Male, age 53, unknown 83.3
1839 Male, age 51, unknown 80.7
2087 Female, age 72, unknown 79.5
2261 Male, age 18, unknown 79.4
1913 Female, age 42, unknown 76.0
1995 Male, age 72, unknown 71.5
2587 Male, age 74, left hemisphere 66.2
1895 Male, age 76, right hemisphere 61.4
Ventral tegmental area
nTPM: 82.3
2223 Female, age 72, unknown 94.4
2218 Male, age 76, both hemispheres 92.7
1915 Female, age 42, unknown 87.0
2410 Female, age 72, unknown 80.2
1942 Male, age 51, unknown 73.1
2021 Male, age 53, unknown 66.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.8
Samples: 139

Max nTPM: 33.5
Min nTPM: 10.8
Std nTPM: 4.5
Median nTPM: 22.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 33.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 33.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 33.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 32.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 31.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 31.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 31.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 31.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 31.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 30.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 30.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.7
FF:10158-103A5 76 years, female 38.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 74.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.3
Samples: 4

Max nTPM: 83.6
Min nTPM: 55.5
Sample A Female 75.7
Sample B Female 55.5
Sample C Male 83.6
Sample D Male 70.2
Midbrain
nTPM: 74.5
Samples: 4

Max nTPM: 97.2
Min nTPM: 55.0
Sample A Female 97.2
Sample B Female 55.0
Sample C Male 84.2
Sample D Male 61.4
Periaqueductal gray
nTPM: 54.7
Samples: 3

Max nTPM: 60.3
Min nTPM: 49.7
Sample B Female 54.1
Sample C Male 60.3
Sample D Male 49.7
Superior colliculi
nTPM: 67.4
Samples: 4

Max nTPM: 77.0
Min nTPM: 48.2
Sample A Female 69.8
Sample B Female 48.2
Sample C Male 77.0
Sample D Male 74.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 40.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.9
Samples: 4

Max nTPM: 41.9
Min nTPM: 39.3
Sample A Male 41.6
Sample B Male 39.3
Sample C Female 40.9
Sample D Female 41.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69530672 Antisense, RP_050421_04_C10, Mouse strain C57BL/6J (56 days, male) 0.6

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