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VPS28
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:141.0 nTPM
HPA Brain:0.4 nTPM
GTEx:141.0 nTPM
FANTOM5:44.8 Scaled Tags Per Million
Pig:30.2 nTPM
Mouse:215.3 nTPM
Allen mouse:9.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.4
Sample id Sample description nTPM
Amygdala
nTPM: 0.4
2514 Male, age 75, right hemisphere 1.5
2517 Female, age 94, left hemisphere 0.4
1987 Female, age 91, left hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 0.1
1955 Male, age 76, both hemispheres 0.4
2609 Male, age 75, right hemisphere 0.3
2110 Male, age 80, left hemisphere 0.1
2243 Female, age 91, right hemisphere 0.0
2685 Female, age 94, left hemisphere 0.0
2827 Female, age 67, right hemisphere 0.0
Central amygdala
nTPM: 0.0
1905 Male, age 76, both hemispheres 0.1
2239 Male, age 80, left hemisphere 0.0
2515 Male, age 75, right hemisphere 0.0
2701 Female, age 91, right hemisphere 0.0
2826 Female, age 94, left hemisphere 0.0
Corticomedial amygdala
nTPM: 0.4
2535 Female, age 67, right hemisphere 1.8
2242 Female, age 91, right hemisphere 0.4
2429 Female, age 94, left hemisphere 0.3
2240 Male, age 76, both hemispheres 0.0
2428 Male, age 75, right hemisphere 0.0
2829 Male, age 80, left hemisphere 0.0
Lateral amygdala
nTPM: 0.2
2830 Female, age 67, right hemisphere 0.8
2256 Male, age 80, left hemisphere 0.4
2516 Male, age 75, right hemisphere 0.2
1883 Male, age 76, both hemispheres 0.0
2255 Female, age 91, right hemisphere 0.0
2534 Female, age 94, left hemisphere 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 141.0
Samples: 152

Max nTPM: 337.1
Min nTPM: 87.4
Std nTPM: 36.6
Median nTPM: 134.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 337.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 299.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 276.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 260.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 243.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 202.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 201.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 199.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 196.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 195.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 189.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 187.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 185.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 182.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 181.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 176.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 174.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 173.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 172.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 171.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 167.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 166.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 165.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 165.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 164.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 164.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 163.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 163.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 161.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 160.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 160.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 159.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 159.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 159.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 158.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 157.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 156.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 155.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 154.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 153.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 153.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 153.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 153.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 152.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 152.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 150.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 147.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 147.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 146.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 145.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 145.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 145.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 144.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 144.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 143.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 142.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 142.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 141.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 140.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 139.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 139.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 139.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 138.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 137.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 137.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 137.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 137.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 137.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 137.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 137.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 136.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 136.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 136.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 136.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 136.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 135.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 134.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 133.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 132.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 132.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 132.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 132.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 131.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 131.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 131.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 130.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 130.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 130.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 129.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 129.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 128.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 128.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 128.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 127.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 127.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 127.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 127.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 126.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 126.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 126.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 125.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 125.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 124.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 124.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 123.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 122.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 122.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 122.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 122.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 121.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 121.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 121.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 121.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 121.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 120.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 120.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 118.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 116.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 116.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 115.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 115.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 115.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 115.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 114.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 113.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 113.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 110.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 110.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 109.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 108.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 108.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 107.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 106.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 105.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 105.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 105.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 104.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 104.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 103.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 103.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 101.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 100.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 100.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 100.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 97.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 96.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 96.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 95.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 95.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 94.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 88.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 87.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

44.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 44.8
FF:10151-102I7 76 years, female 44.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.2
Pig sample Sample description nTPM
Amygdala
nTPM: 30.2
Samples: 4

Max nTPM: 38.4
Min nTPM: 24.7
Sample A Female 38.4
Sample B Female 24.7
Sample C Male 28.5
Sample D Male 29.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

215.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 215.3
Samples: 4

Max nTPM: 221.4
Min nTPM: 208.1
Sample A Male 220.7
Sample B Male 221.4
Sample C Female 208.1
Sample D Female 210.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.7
68321662 Antisense, RP_041130_02_H03, Mouse strain C57BL/6J (56 days, male) 9.7

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