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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1201.2 nTPM
GTEx:1201.2 nTPM
FANTOM5:825.1 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA050165
Squamous epithelial cells High


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1201.2
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1201.2
Samples: 156

Max nTPM: 2598.1
Min nTPM: 671.6
Std nTPM: 290.6
Median nTPM: 1144.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 2598.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2122.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1883.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1848.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1837.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1831.1
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 1825.4
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1812.9
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1748.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1735.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1719.4
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1704.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1641.0
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1626.5
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1595.2
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1593.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1570.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1533.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1515.6
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1511.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1498.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1492.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1486.2
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1478.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1453.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1450.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1434.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1432.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1428.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1425.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1413.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1407.6
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1406.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1381.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 1380.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1356.5
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1347.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1342.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1337.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1332.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1325.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1323.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1317.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1314.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1311.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1310.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1302.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1295.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1277.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1276.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1272.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1272.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1269.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1259.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1258.5
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1256.9
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1253.8
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1253.7
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1246.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1238.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1226.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1213.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1206.8
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1195.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1194.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1190.7
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1183.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1181.9
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1171.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1170.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1169.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1168.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1163.9
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1163.7
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1150.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1150.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1149.4
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1147.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1141.1
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1137.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1137.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1136.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1134.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1129.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1125.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1124.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1124.3
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1119.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1112.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1109.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1102.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1102.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1101.4
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1100.7
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1099.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1098.9
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1095.8
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1094.4
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1087.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1085.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1066.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1065.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1061.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1059.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1056.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1052.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1050.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1048.7
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1034.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1033.4
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1030.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1023.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1019.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 1011.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1010.9
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1000.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 996.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 993.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 991.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 990.5
GTEX-QCQG-1226-SM-48U23 50-59 years, female 988.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 985.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 978.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 978.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 969.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 963.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 953.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 946.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 941.8
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 937.3
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 937.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 931.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 929.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 928.7
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 927.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 925.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 924.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 901.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 899.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 890.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 883.5
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 883.5
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 883.1
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 882.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 868.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 862.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 861.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 857.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 828.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 817.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 771.7
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 771.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 757.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 745.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 727.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 671.6
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

825.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 825.1
FF:10204-103F6 68 years, female 825.1

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