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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
75.2
Sample id
Sample description
nTPM
Arcuate nucleus nTPM: 75.2
2226
Male, age 75, left hemisphere
86.4
1961
Female, age 42, unknown
64.1
Dorsomedial nucleus nTPM: 34.5
2041
Female, age 72, unknown
43.2
2017
Female, age 42, unknown
31.4
1989
Male, age 62, unknown
29.0
Lateral hypothalamic area nTPM: 43.2
2228
Male, age 66, unknown
50.3
2271
Male, age 75, both hemispheres
47.2
1791
Male, age 80, right hemisphere
43.7
2412
Male, age 62, unknown
31.7
Mammillary body nTPM: 16.0
2413
Male, age 66, unknown
20.0
1923
Female, age 72, unknown
19.4
1948
Female, age 72, unknown
14.7
1945
Male, age 80, right hemisphere
13.2
1834
Female, age 42, unknown
12.9
Paraventricular nucleus nTPM: 31.6
2700
Male, age 62, unknown
31.6
Preoptic area nTPM: 35.4
1907
Male, age 80, right hemisphere
60.1
2414
Female, age 72, unknown
23.2
1861
Female, age 42, unknown
23.0
Supraoptic nucleus nTPM: 22.3
2835
Female, age 72, unknown
25.2
1894
Female, age 72, unknown
24.7
2043
Male, age 62, unknown
16.9
Ventromedial nucleus nTPM: 56.4
1982
Female, age 72, unknown
57.3
1822
Female, age 42, unknown
55.5
HYPOTHALAMUS - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
15.2
GTEx sample id
Sample description
nTPM
Brain - Hypothalamus Average nTPM: 15.2
Samples: 202
Max nTPM: 41.8
Min nTPM: 0.4
Std nTPM: 9.5
Median nTPM: 14.1
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.4
Mouse sample
Sample description
nTPM
Hypothalamus nTPM: 22.4
Samples: 4
Max nTPM: 26.8
Min nTPM: 20.6
Sample A
Male
26.8
Sample B
Male
20.9
Sample C
Female
21.4
Sample D
Female
20.6
HYPOTHALAMUS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
