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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:186.5 nTPM
HPA Brain:184.1 nTPM
GTEx:186.5 nTPM
FANTOM5:140.9 Scaled Tags Per Million
Pig:205.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 170.2
2565 Male, age 75, midline 191.8
1981 Female, age 72, midline 191.7
2194 Female, age 79, both hemispheres 186.9
2816 Male, age 47, midline 148.5
2048 Male, age 55, midline 132.1
Cervical spinal cord, dorsal horn
nTPM: 184.1
2173 Female, age 72, unknown 215.7
2069 Male, age 47, both hemispheres 209.3
2296 Male, age 66, both hemispheres 189.6
2297 Male, age 75, both hemispheres 181.6
2721 Male, age 90, both hemispheres 155.9
1877 Male, age 55, unknown 152.2
Cervical spinal cord, ventral horn
nTPM: 174.4
2480 Male, age 75, both hemispheres 198.2
2809 Male, age 90, both hemispheres 180.7
2098 Female, age 72, unknown 178.8
2068 Male, age 55, unknown 171.3
2295 Male, age 66, both hemispheres 162.7
2820 Female, age 79, both hemispheres 154.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

186.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 186.5
Samples: 159

Max nTPM: 317.5
Min nTPM: 143.1
Std nTPM: 24.6
Median nTPM: 183.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 317.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 284.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 257.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 242.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 241.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 239.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 237.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 235.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 228.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 224.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 223.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 219.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 219.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 217.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 216.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 215.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 213.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 213.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 211.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 210.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 210.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 208.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 207.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 207.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 206.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 205.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 205.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 204.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 204.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 203.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 203.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 203.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 202.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 201.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 200.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 199.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 198.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 197.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 197.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 196.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 195.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 195.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 195.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 195.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 194.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 194.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 194.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 193.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 193.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 193.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 191.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 191.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 191.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 190.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 190.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 190.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 190.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 189.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 189.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 188.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 188.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 188.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 188.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 188.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 187.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 187.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 187.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 187.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 187.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 187.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 186.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 185.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 185.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 185.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 185.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 183.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 183.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 183.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 183.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 183.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 182.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 181.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 180.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 180.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 180.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 180.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 179.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 179.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 179.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 179.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 179.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 179.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 178.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 178.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 178.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 178.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 177.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 177.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 177.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 177.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 177.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 177.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 176.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 176.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 176.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 176.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 176.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 176.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 175.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 174.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 174.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 173.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 173.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 172.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 171.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 171.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 171.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 170.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 170.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 169.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 169.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 169.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 168.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 168.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 168.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 168.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 168.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 168.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 168.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 167.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 166.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 166.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 165.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 165.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 164.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 163.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 163.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 163.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 163.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 163.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 162.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 161.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 161.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 160.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 160.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 160.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 159.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 158.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 156.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 156.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 154.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 152.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 151.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 151.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 149.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 148.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 148.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 146.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 143.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

140.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 140.9
FF:10181-103D1 60 years, female 148.0
FF:10159-103A6 76 years, female 133.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

205.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 188.2
Samples: 4

Max nTPM: 207.6
Min nTPM: 158.9
Sample A Female 207.6
Sample B Female 158.9
Sample C Male 195.3
Sample D Male 190.8
Ventral spinal cord
nTPM: 205.0
Samples: 4

Max nTPM: 217.6
Min nTPM: 189.3
Sample A Female 203.9
Sample B Female 209.2
Sample C Male 217.6
Sample D Male 189.3

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