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KASH5
HPA
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  • KASH5
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

KASH5
Synonyms CCDC155, FLJ32658
Gene descriptioni

Full gene name according to HGNC.

KASH domain containing 5
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 19
Cytoband q13.33
Chromosome location (bp) 49388219 - 49417990
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000161609 (version 109)
Entrez gene 147872
HGNC HGNC:26520
UniProt Q8N6L0 (UniProt - Evidence at protein level)
neXtProt NX_Q8N6L0
GeneCards KASH5
Antibodypedia KASH5 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

As a component of the LINC (LInker of Nucleoskeleton and Cytoskeleton) complex, involved in the connection between the nuclear lamina and the cytoskeleton. The nucleocytoplasmic interactions established by the LINC complex play an important role in the transmission of mechanical forces across the nuclear envelope and in nuclear movement and positioning. Required for telomere attachment to nuclear envelope in the prophase of meiosis 1. Required for rapid telomere prophase movements implicating a SUN1/2:KASH5 LINC complex in which SUN1 and SUN2 seem to act at least partial redundantly. Required for homolog pairing during meiotic prophase in spermatocytes and probably oocytes. Essential for male and female gametogenesis 2. Recruits cytoplasmic dynein to telomere attachment sites at the nuclear envelope in spermatocytes. In oocytes is involved in meiotic resumption and spindle formation.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Meiosis
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable dynein complex binding activity. Predicted to be involved in several processes, including cytoskeleton organization; homologous chromosome segregation; and spindle localization. Predicted to act upstream of or within double-strand break repair via homologous recombination; oogenesis; and spermatogenesis. Predicted to be integral component of membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Predicted to be active in chromosome; meiotic spindle pole; and nuclear outer membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
KASH5-201
ENSP00000404220
ENST00000447857
Q8N6L0
[Direct mapping] Protein KASH5
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000724 [double-strand break repair via homologous recombination]
GO:0000781 [chromosome, telomeric region]
GO:0000800 [lateral element]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005640 [nuclear outer membrane]
GO:0005694 [chromosome]
GO:0007015 [actin filament organization]
GO:0007129 [homologous chromosome pairing at meiosis]
GO:0007283 [spermatogenesis]
GO:0016020 [membrane]
GO:0034397 [telomere localization]
GO:0034993 [meiotic nuclear membrane microtubule tethering complex]
GO:0042802 [identical protein binding]
GO:0048477 [oogenesis]
GO:0051225 [spindle assembly]
GO:0051321 [meiotic cell cycle]
GO:0051653 [spindle localization]
GO:0070840 [dynein complex binding]
GO:0090172 [microtubule cytoskeleton organization involved in homologous chromosome segregation]
GO:0090220 [chromosome localization to nuclear envelope involved in homologous chromosome segregation]
GO:0090619 [meiotic spindle pole]
Show all
562 aa
62.8 kDa
No 1
KASH5-205
ENSP00000469435
ENST00000594043
M0QXW9
[Direct mapping] Protein KASH5
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0034397 [telomere localization]
GO:0034993 [meiotic nuclear membrane microtubule tethering complex]
Show all
193 aa
20.8 kDa
No 0
KASH5-206
ENSP00000468838
ENST00000594905
M0QX09
[Direct mapping] Protein KASH5
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0034397 [telomere localization]
GO:0034993 [meiotic nuclear membrane microtubule tethering complex]
Show all
75 aa
8 kDa
No 0
KASH5-207
ENSP00000471777
ENST00000595828
M0R1C7
[Direct mapping] Protein KASH5
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0034397 [telomere localization]
GO:0034993 [meiotic nuclear membrane microtubule tethering complex]
Show all
188 aa
20.4 kDa
No 0
KASH5-213
ENSP00000469367
ENST00000598730
M0QXT3
[Direct mapping] Protein KASH5
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0034397 [telomere localization]
GO:0034993 [meiotic nuclear membrane microtubule tethering complex]
Show all
91 aa
9.8 kDa
No 0
KASH5-214
ENSP00000470819
ENST00000600570
M0QZW6
[Direct mapping] Protein KASH5
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0034397 [telomere localization]
GO:0034993 [meiotic nuclear membrane microtubule tethering complex]
Show all
524 aa
58.4 kDa
No 1

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