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  • EIF4A1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:124.3 nTPM
HPA Brain:81.3 nTPM
GTEx:124.3 nTPM
FANTOM5:21.9 Scaled Tags Per Million
Pig:85.5 nTPM
Mouse:323.4 nTPM
Allen mouse:25.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.3
Sample id Sample description nTPM
Amygdala
nTPM: 81.3
2814 Male, age 76, right hemisphere 90.0
1987 Female, age 91, left hemisphere 84.7
2695 Female, age 67, right hemisphere 82.1
2514 Male, age 75, right hemisphere 81.8
2517 Female, age 94, left hemisphere 68.0
Basal amygdala
nTPM: 68.4
2110 Male, age 80, left hemisphere 76.7
1955 Male, age 76, both hemispheres 72.7
2609 Male, age 75, right hemisphere 72.5
2243 Female, age 91, right hemisphere 66.2
2685 Female, age 94, left hemisphere 65.5
2827 Female, age 67, right hemisphere 56.5
Central amygdala
nTPM: 75.1
2515 Male, age 75, right hemisphere 92.8
1905 Male, age 76, both hemispheres 83.7
2239 Male, age 80, left hemisphere 72.8
2701 Female, age 91, right hemisphere 64.5
2826 Female, age 94, left hemisphere 61.6
Corticomedial amygdala
nTPM: 70.1
2829 Male, age 80, left hemisphere 79.8
2428 Male, age 75, right hemisphere 79.2
2242 Female, age 91, right hemisphere 73.8
2240 Male, age 76, both hemispheres 69.0
2429 Female, age 94, left hemisphere 68.9
2535 Female, age 67, right hemisphere 50.0
Lateral amygdala
nTPM: 67.6
1883 Male, age 76, both hemispheres 77.4
2256 Male, age 80, left hemisphere 72.6
2516 Male, age 75, right hemisphere 71.6
2255 Female, age 91, right hemisphere 63.6
2830 Female, age 67, right hemisphere 61.5
2534 Female, age 94, left hemisphere 58.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 124.3
Samples: 152

Max nTPM: 933.0
Min nTPM: 70.5
Std nTPM: 79.1
Median nTPM: 106.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 933.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 350.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 300.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 299.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 263.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 261.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 237.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 210.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 194.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 183.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 177.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 174.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 173.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 172.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 170.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 166.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 163.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 162.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 159.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 157.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 156.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 152.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 151.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 150.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 150.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 149.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 147.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 147.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 146.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 144.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 141.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 141.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 138.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 136.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 136.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 134.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 134.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 134.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 132.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 131.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 129.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 128.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 128.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 126.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 126.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 125.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 125.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 124.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 123.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 123.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 120.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 119.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 118.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 117.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 117.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 117.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 114.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 114.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 114.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 114.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 113.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 113.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 112.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 112.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 112.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 110.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 110.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 110.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 109.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 108.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 108.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 108.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 107.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 107.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 107.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 106.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 106.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 106.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 106.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 106.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 105.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 105.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 105.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 102.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 102.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 101.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 101.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 99.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 99.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 99.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 99.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 98.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 98.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 97.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 97.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 97.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 96.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 96.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 96.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 96.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 95.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 95.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 95.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 94.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 93.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 93.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 93.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 93.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 93.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 93.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 92.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 92.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 92.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 92.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 92.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 91.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 91.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 91.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 90.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 89.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 89.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 88.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 88.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 88.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 88.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 88.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 88.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 87.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 87.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 87.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 87.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 87.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 86.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 86.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 84.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 83.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 83.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 83.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 82.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 81.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 81.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 80.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 80.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 79.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 78.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 78.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 78.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 77.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 77.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 77.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 75.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 70.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

21.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 21.9
FF:10151-102I7 76 years, female 21.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.5
Pig sample Sample description nTPM
Amygdala
nTPM: 85.5
Samples: 4

Max nTPM: 108.7
Min nTPM: 75.1
Sample A Female 108.7
Sample B Female 77.4
Sample C Male 75.1
Sample D Male 80.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

323.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 323.4
Samples: 4

Max nTPM: 342.0
Min nTPM: 298.7
Sample A Male 329.1
Sample B Male 342.0
Sample C Female 298.7
Sample D Female 323.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

25.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.6
68924419 Antisense, RP_050303_02_C11, Mouse strain C57BL/6J (56 days, male) 25.6

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