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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:790.5 nTPM
GTEx:790.5 nTPM
FANTOM5:91.0 Scaled Tags Per Million
Pig:110.7 nTPM
Mouse:2604.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

790.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 790.5
Samples: 105

Max nTPM: 1126.3
Min nTPM: 522.4
Std nTPM: 120.2
Median nTPM:
237_1 82 years, male 1126.3
35_1 74 years, female 1063.2
246_1 77 years, male 1051.6
307_1 66 years, female 989.3
495_1 57 years, female 984.6
379_1 60 years, male 982.4
389_1 86 years, female 961.2
217_1 76 years, male 960.1
229_1 69 years, female 956.4
321_1 62 years, female 947.2
491_1 89 years, female 945.8
384_1 83 years, male 932.8
315_1 62 years, female 929.6
414_1 84 years, female 920.3
415_1 77 years, female 919.2
265_1 87 years, male 915.8
162_1 79 years, female 912.8
189_1 76 years, male 911.8
375_1 74 years, female 910.5
126_1 63 years, male 909.8
405_1 91 years, male 907.8
466_1 57 years, female 905.9
153_1 70 years, female 904.4
490_1 67 years, female 896.9
17_1 71 years, male 893.3
355_1 70 years, female 892.2
120_1 70 years, female 888.6
526_1 61 years, male 884.8
145_1 84 years, male 882.7
311_1 78 years, male 880.3
447_1 81 years, male 877.1
41_1 94 years, female 871.4
322_1 76 years, male 871.2
308_1 70 years, female 868.7
386_1 76 years, male 866.3
347_1 72 years, male 851.4
377_1 82 years, female 851.3
4_1 88 years, female 836.5
376_1 75 years, female 828.1
452_1 88 years, female 827.6
2_1 77 years, female 819.7
396_1 62 years, male 810.8
218_1 71 years, female 804.0
81_1 67 years, male 802.3
243_1 75 years, male 800.3
139_1 64 years, female 796.2
404_1 82 years, female 796.1
394_1 75 years, female 793.8
320_1 89 years, female 791.6
348_1 84 years, male 790.2
117_1 61 years, male 789.4
499_1 55 years, female 788.5
518_1 75 years, female 780.3
6_1 73 years, female 771.9
501_1 88 years, male 770.7
173_1 67 years, male 770.2
137_1 83 years, male 766.7
32_1 67 years, male 766.4
254_1 77 years, female 765.9
18_1 88 years, male 763.8
251_1 78 years, male 763.5
266_1 85 years, male 761.7
42_1 85 years, male 759.6
413_1 59 years, female 757.1
288_1 66 years, female 754.0
335_1 73 years, female 744.9
172_1 72 years, female 737.5
149_1 88 years, male 736.5
142_1 61 years, female 736.3
468_1 89 years, male 735.7
324_1 76 years, male 729.8
119_1 70 years, female 728.5
89_1 63 years, male 714.3
352_1 62 years, male 713.4
291_1 76 years, male 713.3
313_1 79 years, female 703.6
349_1 83 years, male 701.4
314_1 67 years, male 699.8
316_1 62 years, male 698.6
109_1 81 years, female 693.6
319_1 81 years, male 693.4
43_1 64 years, female 693.3
354_1 81 years, female 692.7
353_1 82 years, female 689.1
177_1 74 years, male 682.1
99_1 64 years, male 679.1
317_1 60 years, male 678.3
425_1 59 years, female 677.2
264_1 73 years, female 663.3
351_1 91 years, male 659.0
115_1 83 years, male 656.5
286_1 68 years, female 653.3
295_1 61 years, female 648.6
480_1 63 years, male 635.0
350_1 84 years, female 629.1
406_1 79 years, male 625.0
503_1 68 years, male 616.6
517_1 88 years, male 611.2
163_1 78 years, male 607.9
9_1 66 years, female 603.1
318_1 68 years, male 593.4
292_1 71 years, male 588.8
356_1 87 years, female 585.6
293_1 68 years, female 578.2
506_1 65 years, male 522.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 91.0
FF:10030-101E3 24-65 years, mixed 91.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.7
Pig sample Sample description nTPM
Retina
nTPM: 110.7
Samples: 4

Max nTPM: 130.6
Min nTPM: 101.6
Sample A Female 104.9
Sample B Female 105.8
Sample C Male 130.6
Sample D Male 101.6

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2604.7
Mouse sample Sample description nTPM
Retina
nTPM: 2604.7
Samples: 4

Max nTPM: 2947.4
Min nTPM: 2121.6
Sample A Male 2716.3
Sample B Male 2121.6
Sample C Female 2633.4
Sample D Female 2947.4

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