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TBC1D24
HPA
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  • SUMMARY

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  • TBC1D24
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

TBC1D24
Synonyms DFNA65, DFNB86, KIAA1171, TLDC6
Gene descriptioni

Full gene name according to HGNC.

TBC1 domain family member 24
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 16
Cytoband p13.3
Chromosome location (bp) 2475051 - 2509560
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000162065 (version 109)
Entrez gene 57465
HGNC HGNC:29203
UniProt Q9ULP9 (UniProt - Evidence at protein level)
neXtProt NX_Q9ULP9
GeneCards TBC1D24
Antibodypedia TBC1D24 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

May act as a GTPase-activating protein for Rab family protein(s) 1, 2. Involved in neuronal projections development, probably through a negative modulation of ARF6 function 3. Involved in the regulation of synaptic vesicle trafficking 4.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

GTPase activation
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a protein with a conserved domain, referred to as the TBC domain, characteristic of proteins which interact with GTPases. TBC domain proteins may serve as GTPase-activating proteins for a particular group of GTPases, the Rab (Ras-related proteins in brain) small GTPases which are involved in the regulation of membrane trafficking. Mutations in this gene are associated with familial infantile myoclonic epilepsy. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
TBC1D24-201
ENSP00000457896
ENST00000562105
H3BV07
[Direct mapping] TBC1 domain family member 24
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Epilepsy
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031175 [neuron projection development]
GO:0031410 [cytoplasmic vesicle]
GO:0042995 [cell projection]
GO:0045202 [synapse]
GO:0098793 [presynapse]
Show all
455 aa
52 kDa
No 1
TBC1D24-204
ENSP00000454408
ENST00000567020
Q9ULP9
[Direct mapping] TBC1 domain family member 24
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Epilepsy
   Ear disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0030054 [cell junction]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031175 [neuron projection development]
GO:0031410 [cytoplasmic vesicle]
GO:0031594 [neuromuscular junction]
GO:0036475 [neuron death in response to oxidative stress]
GO:0042995 [cell projection]
GO:0043195 [terminal bouton]
GO:0045202 [synapse]
GO:0098793 [presynapse]
Show all
553 aa
62.3 kDa
No 0
TBC1D24-206
ENSP00000486121
ENST00000627285
Q9ULP9
[Direct mapping] TBC1 domain family member 24
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Epilepsy
   Ear disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0030054 [cell junction]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031175 [neuron projection development]
GO:0031410 [cytoplasmic vesicle]
GO:0031594 [neuromuscular junction]
GO:0036475 [neuron death in response to oxidative stress]
GO:0042995 [cell projection]
GO:0043195 [terminal bouton]
GO:0045202 [synapse]
GO:0098793 [presynapse]
Show all
553 aa
62.3 kDa
No 0
TBC1D24-209
ENSP00000494145
ENST00000643767
A0A2R8Y518
[Direct mapping] TBC1 domain family member 24
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Epilepsy
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031175 [neuron projection development]
GO:0031410 [cytoplasmic vesicle]
GO:0042995 [cell projection]
GO:0045202 [synapse]
GO:0098793 [presynapse]
Show all
465 aa
52.9 kDa
No 1
TBC1D24-210
ENSP00000494678
ENST00000646147
Q9ULP9
[Direct mapping] TBC1 domain family member 24
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Epilepsy
   Ear disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0016358 [dendrite development]
GO:0030054 [cell junction]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031175 [neuron projection development]
GO:0031410 [cytoplasmic vesicle]
GO:0031594 [neuromuscular junction]
GO:0036475 [neuron death in response to oxidative stress]
GO:0042995 [cell projection]
GO:0043195 [terminal bouton]
GO:0045202 [synapse]
GO:0048488 [synaptic vesicle endocytosis]
GO:0050775 [positive regulation of dendrite morphogenesis]
GO:0061564 [axon development]
GO:0098793 [presynapse]
GO:1902083 [negative regulation of peptidyl-cysteine S-nitrosylation]
GO:1903204 [negative regulation of oxidative stress-induced neuron death]
GO:2000463 [positive regulation of excitatory postsynaptic potential]
GO:2001224 [positive regulation of neuron migration]
Show all
559 aa
62.9 kDa
No 0

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