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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:923.5 nTPM
HPA Brain:323.5 nTPM
GTEx:923.5 nTPM
FANTOM5:60.8 Scaled Tags Per Million
Mouse:565.1 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

323.5
Sample id Sample description nTPM
Amygdala
nTPM: 323.5
2514 Male, age 75, right hemisphere 364.9
2695 Female, age 67, right hemisphere 364.7
1987 Female, age 91, left hemisphere 307.3
2517 Female, age 94, left hemisphere 301.0
2814 Male, age 76, right hemisphere 279.5
Basal amygdala
nTPM: 280.7
2827 Female, age 67, right hemisphere 355.4
2609 Male, age 75, right hemisphere 303.3
2110 Male, age 80, left hemisphere 264.3
2243 Female, age 91, right hemisphere 258.4
2685 Female, age 94, left hemisphere 255.2
1955 Male, age 76, both hemispheres 247.3
Central amygdala
nTPM: 308.8
2826 Female, age 94, left hemisphere 436.3
2515 Male, age 75, right hemisphere 353.4
1905 Male, age 76, both hemispheres 265.2
2239 Male, age 80, left hemisphere 262.3
2701 Female, age 91, right hemisphere 226.7
Corticomedial amygdala
nTPM: 271.9
2428 Male, age 75, right hemisphere 310.0
2535 Female, age 67, right hemisphere 287.4
2242 Female, age 91, right hemisphere 279.0
2240 Male, age 76, both hemispheres 266.3
2829 Male, age 80, left hemisphere 259.4
2429 Female, age 94, left hemisphere 229.1
Lateral amygdala
nTPM: 314.5
2830 Female, age 67, right hemisphere 416.1
2516 Male, age 75, right hemisphere 370.5
2534 Female, age 94, left hemisphere 326.6
2256 Male, age 80, left hemisphere 284.4
2255 Female, age 91, right hemisphere 253.3
1883 Male, age 76, both hemispheres 236.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

923.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 923.5
Samples: 152

Max nTPM: 2335.5
Min nTPM: 522.0
Std nTPM: 335.0
Median nTPM: 847.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2335.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2265.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2062.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1969.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1927.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1847.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1703.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1699.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1671.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1429.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1425.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1422.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1413.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1412.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1394.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1379.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1326.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1282.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1274.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1243.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1188.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1154.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1138.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1127.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1113.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1110.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1109.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1096.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1084.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1069.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1067.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1063.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1035.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1033.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1029.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1023.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1022.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1021.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1020.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1017.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 999.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 998.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 994.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 992.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 988.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 986.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 984.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 971.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 963.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 959.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 956.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 947.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 940.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 936.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 935.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 929.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 926.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 923.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 922.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 918.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 917.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 905.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 895.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 890.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 881.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 879.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 879.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 877.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 876.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 874.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 865.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 858.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 857.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 852.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 849.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 849.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 845.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 842.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 841.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 841.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 840.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 837.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 835.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 835.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 834.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 831.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 831.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 829.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 817.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 808.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 800.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 796.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 795.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 787.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 785.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 773.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 768.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 767.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 764.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 762.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 749.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 748.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 736.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 735.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 727.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 718.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 717.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 714.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 713.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 709.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 707.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 706.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 699.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 698.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 698.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 698.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 697.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 693.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 678.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 673.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 672.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 669.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 660.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 659.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 659.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 649.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 648.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 646.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 645.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 639.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 631.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 629.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 623.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 621.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 617.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 616.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 602.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 600.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 599.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 598.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 596.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 592.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 592.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 582.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 579.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 576.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 573.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 560.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 547.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 534.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 524.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 522.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

60.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 60.8
FF:10151-102I7 76 years, female 60.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

565.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 565.1
Samples: 4

Max nTPM: 609.2
Min nTPM: 509.4
Sample A Male 509.4
Sample B Male 591.7
Sample C Female 609.2
Sample D Female 550.0

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