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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:151.7 nTPM
HPA:96.4 nTPM
GTEx:151.7 nTPM
FANTOM5:215.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051293
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.4
overview
Male, age 65
Small intestine sample 232
nTPM: 82.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 103.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 127.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 72

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 151.7
Samples: 187

Max nTPM: 514.6
Min nTPM: 13.5
Std nTPM: 113.5
Median nTPM: 110.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 514.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 477.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 449.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 440.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 399.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 383.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 373.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 370.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 367.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 361.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 345.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 345.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 341.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 339.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 337.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 336.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 333.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 315.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 313.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 312.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 311.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 306.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 302.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 299.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 299.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 299.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 295.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 294.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 294.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 291.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 291.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 290.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 280.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 280.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 279.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 278.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 277.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 275.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 274.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 269.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 266.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 264.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 260.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 257.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 249.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 247.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 247.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 246.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 242.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 242.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 234.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 234.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 231.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 209.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 206.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 199.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 199.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 197.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 195.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 190.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 177.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 176.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 170.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 166.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 165.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 164.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 161.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 159.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 158.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 155.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 154.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 154.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 154.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 152.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 149.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 148.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 143.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 139.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 139.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 139.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 136.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 131.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 129.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 127.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 126.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 124.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 121.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 119.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 118.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 114.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 113.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 112.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 110.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 110.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 106.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 106.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 106.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 105.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 105.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 104.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 101.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 101.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 100.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 99.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 98.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 95.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 93.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 90.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 90.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 89.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 89.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 88.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 86.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 85.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 85.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 85.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 84.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 84.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 83.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 83.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 81.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 81.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 80.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 77.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 76.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 75.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 72.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 69.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 69.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 68.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 68.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 67.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 66.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 66.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 65.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 63.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 62.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 62.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 62.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 62.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 59.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 59.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 58.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 56.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 54.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 53.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 51.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 50.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 50.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 49.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 48.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 47.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 46.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 46.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 46.3
GTEX-1192X-2526-SM-59868 50-59 years, male 46.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 45.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 45.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 44.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 43.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 42.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 41.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 40.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 39.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 38.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 37.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 36.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 36.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 36.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 33.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 32.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 31.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 30.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 29.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 29.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 28.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 27.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 26.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 26.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 26.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 23.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 23.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 18.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 18.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 17.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 17.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 13.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

215.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 215.7
FF:10024-101D6 15,40,85 years, mixed 215.7

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