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RBBP4
HPA
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  • RBBP4
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

RBBP4
Synonyms lin-53, NURF55, RbAp48
Gene descriptioni

Full gene name according to HGNC.

RB binding protein 4, chromatin remodeling factor
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband p35.1
Chromosome location (bp) 32651142 - 32686211
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000162521 (version 109)
Entrez gene 5928
HGNC HGNC:9887
UniProt Q09028 (UniProt - Evidence at protein level)
neXtProt NX_Q09028
GeneCards RBBP4
Antibodypedia RBBP4 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; the PRC2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Chromatin regulator, Repressor
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Cell cycle, DNA replication, Transcription, Transcription regulation
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a ubiquitously expressed nuclear protein which belongs to a highly conserved subfamily of WD-repeat proteins. It is present in protein complexes involved in histone acetylation and chromatin assembly. It is part of the Mi-2 complex which has been implicated in chromatin remodeling and transcriptional repression associated with histone deacetylation. This encoded protein is also part of co-repressor complexes, which is an integral component of transcriptional silencing. It is found among several cellular proteins that bind directly to retinoblastoma protein to regulate cell proliferation. This protein also seems to be involved in transcriptional repression of E2F-responsive genes. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
RBBP4-201
ENSP00000362584
ENST00000373485
Q09028
[Direct mapping] Histone-binding protein RBBP4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000781 [chromosome, telomeric region]
GO:0000785 [chromatin]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0005829 [cytosol]
GO:0006260 [DNA replication]
GO:0006325 [chromatin organization]
GO:0006334 [nucleosome assembly]
GO:0006335 [DNA replication-dependent chromatin assembly]
GO:0006338 [chromatin remodeling]
GO:0006355 [regulation of DNA-templated transcription]
GO:0007049 [cell cycle]
GO:0007420 [brain development]
GO:0008094 [ATP-dependent activity, acting on DNA]
GO:0008285 [negative regulation of cell population proliferation]
GO:0016575 [histone deacetylation]
GO:0016580 [Sin3 complex]
GO:0016581 [NuRD complex]
GO:0016589 [NURF complex]
GO:0030336 [negative regulation of cell migration]
GO:0030512 [negative regulation of transforming growth factor beta receptor signaling pathway]
GO:0031492 [nucleosomal DNA binding]
GO:0032991 [protein-containing complex]
GO:0033186 [CAF-1 complex]
GO:0035098 [ESC/E(Z) complex]
GO:0042393 [histone binding]
GO:0042659 [regulation of cell fate specification]
GO:0042826 [histone deacetylase binding]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:1902455 [negative regulation of stem cell population maintenance]
GO:1902459 [positive regulation of stem cell population maintenance]
GO:1904949 [ATPase complex]
GO:2000736 [regulation of stem cell differentiation]
Show all
410 aa
46.2 kDa
No 0
RBBP4-202
ENSP00000362592
ENST00000373493
Q09028
[Direct mapping] Histone-binding protein RBBP4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000781 [chromosome, telomeric region]
GO:0000785 [chromatin]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0005829 [cytosol]
GO:0006260 [DNA replication]
GO:0006325 [chromatin organization]
GO:0006334 [nucleosome assembly]
GO:0006335 [DNA replication-dependent chromatin assembly]
GO:0006338 [chromatin remodeling]
GO:0006355 [regulation of DNA-templated transcription]
GO:0007049 [cell cycle]
GO:0007420 [brain development]
GO:0008094 [ATP-dependent activity, acting on DNA]
GO:0008285 [negative regulation of cell population proliferation]
GO:0016575 [histone deacetylation]
GO:0016580 [Sin3 complex]
GO:0016581 [NuRD complex]
GO:0016589 [NURF complex]
GO:0030336 [negative regulation of cell migration]
GO:0030512 [negative regulation of transforming growth factor beta receptor signaling pathway]
GO:0031492 [nucleosomal DNA binding]
GO:0032991 [protein-containing complex]
GO:0033186 [CAF-1 complex]
GO:0035098 [ESC/E(Z) complex]
GO:0042393 [histone binding]
GO:0042659 [regulation of cell fate specification]
GO:0042826 [histone deacetylase binding]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:1902455 [negative regulation of stem cell population maintenance]
GO:1902459 [positive regulation of stem cell population maintenance]
GO:1904949 [ATPase complex]
GO:2000736 [regulation of stem cell differentiation]
Show all
425 aa
47.7 kDa
No 0
RBBP4-204
ENSP00000398242
ENST00000414241
Q09028
[Direct mapping] Histone-binding protein RBBP4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000781 [chromosome, telomeric region]
GO:0000785 [chromatin]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0005829 [cytosol]
GO:0006260 [DNA replication]
GO:0006325 [chromatin organization]
GO:0006334 [nucleosome assembly]
GO:0006335 [DNA replication-dependent chromatin assembly]
GO:0006338 [chromatin remodeling]
GO:0006355 [regulation of DNA-templated transcription]
GO:0007049 [cell cycle]
GO:0007420 [brain development]
GO:0008094 [ATP-dependent activity, acting on DNA]
GO:0008285 [negative regulation of cell population proliferation]
GO:0016575 [histone deacetylation]
GO:0016580 [Sin3 complex]
GO:0016581 [NuRD complex]
GO:0016589 [NURF complex]
GO:0030336 [negative regulation of cell migration]
GO:0030512 [negative regulation of transforming growth factor beta receptor signaling pathway]
GO:0031492 [nucleosomal DNA binding]
GO:0032991 [protein-containing complex]
GO:0033186 [CAF-1 complex]
GO:0035098 [ESC/E(Z) complex]
GO:0042393 [histone binding]
GO:0042659 [regulation of cell fate specification]
GO:0042826 [histone deacetylase binding]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:1902455 [negative regulation of stem cell population maintenance]
GO:1902459 [positive regulation of stem cell population maintenance]
GO:1904949 [ATPase complex]
GO:2000736 [regulation of stem cell differentiation]
Show all
424 aa
47.6 kDa
No 0
RBBP4-205
ENSP00000389437
ENST00000445722
C9JPP3
[Direct mapping] Histone-binding protein RBBP4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
87 aa
9.7 kDa
No 0
RBBP4-206
ENSP00000396057
ENST00000458695
Q09028
[Direct mapping] Histone-binding protein RBBP4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000781 [chromosome, telomeric region]
GO:0000785 [chromatin]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0005829 [cytosol]
GO:0006260 [DNA replication]
GO:0006325 [chromatin organization]
GO:0006334 [nucleosome assembly]
GO:0006335 [DNA replication-dependent chromatin assembly]
GO:0006338 [chromatin remodeling]
GO:0006355 [regulation of DNA-templated transcription]
GO:0007049 [cell cycle]
GO:0007420 [brain development]
GO:0008094 [ATP-dependent activity, acting on DNA]
GO:0008285 [negative regulation of cell population proliferation]
GO:0016575 [histone deacetylation]
GO:0016580 [Sin3 complex]
GO:0016581 [NuRD complex]
GO:0016589 [NURF complex]
GO:0030336 [negative regulation of cell migration]
GO:0030512 [negative regulation of transforming growth factor beta receptor signaling pathway]
GO:0031492 [nucleosomal DNA binding]
GO:0032991 [protein-containing complex]
GO:0033186 [CAF-1 complex]
GO:0035098 [ESC/E(Z) complex]
GO:0042393 [histone binding]
GO:0042659 [regulation of cell fate specification]
GO:0042826 [histone deacetylase binding]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:1902455 [negative regulation of stem cell population maintenance]
GO:1902459 [positive regulation of stem cell population maintenance]
GO:1904949 [ATPase complex]
GO:2000736 [regulation of stem cell differentiation]
Show all
390 aa
43.5 kDa
No 0
RBBP4-208
ENSP00000433805
ENST00000463378
H0YDK2
[Direct mapping] Histone-binding protein RBBP4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
Show all
262 aa
30.1 kDa
No 0
RBBP4-210
ENSP00000436986
ENST00000475321
H0YF10
[Direct mapping] Histone-binding protein RBBP4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
Show all
207 aa
23.2 kDa
No 0
RBBP4-212
ENSP00000436565
ENST00000482190
H0YEU5
[Direct mapping] Histone-binding protein RBBP4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
Show all
167 aa
19 kDa
No 0
RBBP4-213
ENSP00000437210
ENST00000490500
E9PND5
[Direct mapping] Histone-binding protein RBBP4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
68 aa
7.7 kDa
No 0

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