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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:114.1 nTPM
HPA:114.1 nTPM
GTEx:54.0 nTPM
FANTOM5:260.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA022013
Glandular cells Medium

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.1
overview
Male, age 65
Small intestine sample 232
nTPM: 110.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 113.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 109.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 122.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 54.0
Samples: 187

Max nTPM: 101.5
Min nTPM: 20.8
Std nTPM: 16.1
Median nTPM: 52.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 101.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 97.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 97.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 93.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 89.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 89.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 88.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 84.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 84.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 82.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 81.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 80.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 80.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 80.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 78.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 78.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 78.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 77.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 76.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 76.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 74.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 74.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 73.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 73.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 72.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 71.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 71.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 70.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 70.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 69.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 68.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 68.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 68.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 68.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 68.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 68.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 68.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 67.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 67.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 67.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 66.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 66.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 65.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 65.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 65.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 64.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 64.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 64.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 63.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 63.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 63.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 63.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 62.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 62.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 61.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 61.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 61.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 61.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 61.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 60.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 60.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 60.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 60.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 59.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 59.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 59.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 59.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 58.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 58.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 58.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 58.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 58.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 58.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 58.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 57.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 57.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 56.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 56.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 56.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 55.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 55.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 55.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 54.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 54.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 54.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 54.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 53.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 53.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 53.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 53.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 53.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 52.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 52.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 52.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 52.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 52.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 51.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 51.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 51.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 51.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 51.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 51.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 50.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 50.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 50.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 50.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 49.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 49.5
GTEX-1192X-2526-SM-59868 50-59 years, male 49.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 48.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 48.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 48.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 48.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 48.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 47.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 47.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 46.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 46.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 46.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 46.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 46.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 46.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 45.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 45.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 45.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 44.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 44.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 44.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 44.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 44.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 43.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 43.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 43.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 43.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 43.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 42.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 42.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 42.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 41.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 41.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 41.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 41.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 41.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 41.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 41.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 41.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 40.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 40.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 40.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 40.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 39.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 39.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 39.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 39.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 38.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 38.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 38.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 37.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 36.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 36.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 35.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 35.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 35.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 34.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 34.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 34.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 34.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 33.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 33.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 33.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 33.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 33.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 33.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 33.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 32.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 31.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 31.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 29.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 29.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 29.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 29.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 28.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 28.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 28.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 27.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 25.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 20.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

260.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 260.6
FF:10024-101D6 15,40,85 years, mixed 260.6

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