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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1838.5 nTPM
HPA Brain:787.1 nTPM
GTEx:1838.5 nTPM
FANTOM5:1729.7 Scaled Tags Per Million
Pig:2791.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

787.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 694.9
2816 Male, age 47, midline 785.7
2048 Male, age 55, midline 725.0
1981 Female, age 72, midline 693.4
2565 Male, age 75, midline 691.8
2194 Female, age 79, both hemispheres 578.3
Cervical spinal cord, dorsal horn
nTPM: 702.7
2296 Male, age 66, both hemispheres 1100.6
2173 Female, age 72, unknown 897.2
1877 Male, age 55, unknown 633.0
2069 Male, age 47, both hemispheres 614.9
2721 Male, age 90, both hemispheres 534.4
2297 Male, age 75, both hemispheres 436.1
Cervical spinal cord, ventral horn
nTPM: 787.1
2480 Male, age 75, both hemispheres 1024.3
2098 Female, age 72, unknown 849.5
2295 Male, age 66, both hemispheres 833.3
2809 Male, age 90, both hemispheres 795.6
2820 Female, age 79, both hemispheres 664.3
2068 Male, age 55, unknown 555.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1838.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1838.5
Samples: 159

Max nTPM: 3720.8
Min nTPM: 491.3
Std nTPM: 671.8
Median nTPM: 1784.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 3720.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 3576.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 3564.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 3547.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3437.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 3281.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 3091.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 3077.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 3047.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 3041.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2878.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 2876.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 2871.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2838.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2827.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 2790.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2778.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2743.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 2690.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2637.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 2625.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2570.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 2567.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2556.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 2532.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 2530.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2518.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2496.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2462.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2422.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 2405.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 2386.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 2349.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2340.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2324.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2284.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 2273.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 2250.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2236.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2230.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2218.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 2211.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2198.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2171.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2152.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 2145.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2145.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 2131.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 2109.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2080.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2076.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 2058.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 2037.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2012.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 2004.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1995.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1986.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1969.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1966.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1942.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1932.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1924.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1922.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1911.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1908.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1905.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1900.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1895.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1883.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1882.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1882.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1880.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1879.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1837.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1828.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1826.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1823.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1807.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1803.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1784.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1783.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1776.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1768.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1765.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1751.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1751.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1745.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1726.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1702.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1699.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1694.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1681.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1679.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1676.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1648.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1634.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1626.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1624.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1617.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1603.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1600.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1563.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1547.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1530.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1526.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1521.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1511.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1507.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1502.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1481.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1480.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1479.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1477.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1461.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1458.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1412.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1399.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1393.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1392.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1392.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1391.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1390.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1388.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1383.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1334.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1311.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1294.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1276.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1269.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1219.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1180.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1179.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1172.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1165.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1094.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1085.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1085.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1084.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 1051.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 991.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 987.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 978.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 973.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 964.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 954.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 931.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 911.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 903.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 901.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 867.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 842.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 838.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 762.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 746.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 740.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 672.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 599.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 582.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 491.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1729.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1729.7
FF:10181-103D1 60 years, female 1890.6
FF:10159-103A6 76 years, female 1568.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2791.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2092.6
Samples: 4

Max nTPM: 2325.9
Min nTPM: 1860.3
Sample A Female 1860.3
Sample B Female 2181.8
Sample C Male 2325.9
Sample D Male 2002.3
Ventral spinal cord
nTPM: 2791.7
Samples: 4

Max nTPM: 3887.4
Min nTPM: 2334.3
Sample A Female 2492.4
Sample B Female 2452.8
Sample C Male 2334.3
Sample D Male 3887.4

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