We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
VSNL1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • VSNL1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:210.2 nTPM
HPA Brain:205.7 nTPM
GTEx:210.2 nTPM
FANTOM5:497.8 Scaled Tags Per Million
Pig:188.5 nTPM
Mouse:532.9 nTPM
Allen mouse:5.7 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

205.7
Sample id Sample description nTPM
Amygdala
nTPM: 176.6
2814 Male, age 76, right hemisphere 263.8
1987 Female, age 91, left hemisphere 217.5
2514 Male, age 75, right hemisphere 150.9
2517 Female, age 94, left hemisphere 136.7
2695 Female, age 67, right hemisphere 114.0
Basal amygdala
nTPM: 200.5
2243 Female, age 91, right hemisphere 326.1
2110 Male, age 80, left hemisphere 217.0
2685 Female, age 94, left hemisphere 213.1
1955 Male, age 76, both hemispheres 180.8
2609 Male, age 75, right hemisphere 160.6
2827 Female, age 67, right hemisphere 105.6
Central amygdala
nTPM: 205.7
2701 Female, age 91, right hemisphere 279.7
1905 Male, age 76, both hemispheres 212.7
2826 Female, age 94, left hemisphere 202.9
2239 Male, age 80, left hemisphere 202.6
2515 Male, age 75, right hemisphere 130.9
Corticomedial amygdala
nTPM: 184.0
2829 Male, age 80, left hemisphere 244.7
2429 Female, age 94, left hemisphere 200.0
2428 Male, age 75, right hemisphere 173.1
2240 Male, age 76, both hemispheres 171.4
2242 Female, age 91, right hemisphere 162.7
2535 Female, age 67, right hemisphere 152.0
Lateral amygdala
nTPM: 187.9
2534 Female, age 94, left hemisphere 304.1
2255 Female, age 91, right hemisphere 277.3
1883 Male, age 76, both hemispheres 201.1
2256 Male, age 80, left hemisphere 194.7
2516 Male, age 75, right hemisphere 77.3
2830 Female, age 67, right hemisphere 72.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

210.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 210.2
Samples: 152

Max nTPM: 737.9
Min nTPM: 9.0
Std nTPM: 143.1
Median nTPM: 187.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 737.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 664.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 614.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 583.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 541.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 538.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 528.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 481.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 480.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 444.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 416.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 414.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 409.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 405.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 403.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 394.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 391.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 389.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 376.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 376.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 363.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 360.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 353.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 346.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 345.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 344.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 344.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 338.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 330.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 329.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 315.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 313.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 312.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 311.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 303.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 302.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 300.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 299.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 297.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 297.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 281.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 276.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 275.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 274.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 272.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 266.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 261.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 261.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 261.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 260.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 253.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 250.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 246.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 244.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 243.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 240.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 240.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 236.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 232.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 232.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 230.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 230.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 224.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 215.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 214.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 212.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 212.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 208.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 208.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 208.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 203.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 194.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 194.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 191.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 190.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 189.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 184.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 182.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 181.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 179.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 173.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 172.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 168.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 168.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 164.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 161.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 159.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 158.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 152.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 146.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 144.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 144.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 144.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 137.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 136.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 134.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 127.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 125.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 124.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 123.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 120.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 119.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 117.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 117.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 109.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 108.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 106.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 106.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 103.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 101.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 100.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 100.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 94.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 94.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 92.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 90.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 86.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 83.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 82.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 81.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 81.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 80.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 79.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 77.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 73.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 72.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 71.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 70.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 68.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 68.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 67.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 59.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 58.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 57.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 56.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 55.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 54.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 53.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 52.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 52.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 50.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 46.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 40.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 36.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 35.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 34.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 31.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 30.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 24.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 20.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 19.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 9.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

497.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 497.8
FF:10151-102I7 76 years, female 497.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.5
Pig sample Sample description nTPM
Amygdala
nTPM: 188.5
Samples: 4

Max nTPM: 249.1
Min nTPM: 146.4
Sample A Female 249.1
Sample B Female 200.5
Sample C Male 158.1
Sample D Male 146.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

532.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 532.9
Samples: 4

Max nTPM: 565.9
Min nTPM: 495.9
Sample A Male 565.9
Sample B Male 537.0
Sample C Female 532.6
Sample D Female 495.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.7
1107 Antisense, RP_Baylor_103157, Mouse strain C57BL/6J (56 days, male) 5.7
1106 Antisense, RP_Baylor_103157, Mouse strain C57BL/6J (56 days, male) 4.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org