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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:61.9 nTPM
HPA:61.9 nTPM
GTEx:60.0 nTPM
FANTOM5:216.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002988Antibody CAB000460
Endocrine cells High-
Enterocytes High-
Enterocytes - Microvilli Not detected-
Glandular cells -Low
Goblet cells Medium-
Paneth cells High-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.9
overview
Male, age 65
Small intestine sample 232
nTPM: 68.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 68.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 58.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 52

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 60.0
Samples: 187

Max nTPM: 213.3
Min nTPM: 4.1
Std nTPM: 32.1
Median nTPM: 59.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 213.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 143.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 138.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 129.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 122.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 122.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 114.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 114.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 111.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 110.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 110.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 108.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 107.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 107.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 104.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 99.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 98.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 95.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 95.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 95.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 94.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 94.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 94.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 91.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 91.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 91.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 90.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 90.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 89.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 88.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 87.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 86.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 85.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 85.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 85.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 84.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 84.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 84.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 83.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 83.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 83.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 83.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 82.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 82.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 81.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 80.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 80.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 79.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 79.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 79.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 79.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 78.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 77.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 77.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 77.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 77.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 76.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 76.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 76.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 75.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 74.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 74.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 73.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 73.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 73.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 73.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 72.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 72.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 72.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 71.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 71.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 70.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 70.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 69.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 69.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 68.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 68.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 68.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 65.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 65.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 64.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 64.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 64.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 64.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 63.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 63.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 62.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 61.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 61.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 60.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 60.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 60.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 59.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 59.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 59.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 59.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 59.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 58.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 58.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 58.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 57.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 57.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 57.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 56.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 55.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 55.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 55.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 54.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 54.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 54.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 54.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 53.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 52.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 52.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 52.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 52.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 52.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 51.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 51.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 49.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 48.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 48.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 47.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 47.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 47.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 47.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 46.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 45.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 45.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 45.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 44.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 44.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 44.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 43.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 42.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 42.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 41.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 39.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 39.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 37.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 37.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 37.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 36.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 35.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 34.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 34.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 33.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 33.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 31.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 30.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 30.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 30.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 28.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 26.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 26.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 25.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 25.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 24.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 23.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 22.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 21.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 21.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 20.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 17.7
GTEX-1192X-2526-SM-59868 50-59 years, male 15.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 15.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 15.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 13.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 13.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 12.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 11.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 10.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 10.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 10.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 9.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 9.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 9.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 9.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 9.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 8.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 8.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 7.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 7.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 6.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 6.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 4.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 4.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

216.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 216.6
FF:10024-101D6 15,40,85 years, mixed 216.6

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